Variant report

Variant	rs1675756
Chromosome Location	chr12:44279540-44279541
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:44127316..44130313-chr12:44278484..44280502,2	K562	blood:

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs1057486	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10736017	0.94[ASN][1000 genomes]
rs10748373	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10748378	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10785462	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10785463	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10785466	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10785468	0.87[EUR][1000 genomes]
rs10785469	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10880573	0.87[ASN][1000 genomes]
rs10880578	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10880585	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11182293	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11182324	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11182325	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12298970	0.87[EUR][1000 genomes]
rs12311962	0.87[EUR][1000 genomes]
rs12314126	0.84[EUR][1000 genomes]
rs1358705	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1406787	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1609548	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1609549	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1610291	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1614042	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1621279	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1622590	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1623667	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1623829	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1675755	0.88[EUR][1000 genomes]
rs1675758	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675764	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675765	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675767	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675769	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675771	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1675774	0.93[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1675776	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1675777	0.86[AFR][1000 genomes]
rs1675778	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1675781	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1675782	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1675783	0.89[EUR][1000 genomes]
rs1675784	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1675785	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1675787	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675788	0.91[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1675789	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675790	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1731423	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1731427	0.98[ASN][1000 genomes]
rs1731429	0.98[ASN][1000 genomes]
rs1731430	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1731431	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1731432	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1731434	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1731438	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1731439	0.93[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1731440	0.93[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1731442	0.89[EUR][1000 genomes]
rs1731447	0.91[ASN][1000 genomes]
rs1731448	0.88[EUR][1000 genomes]
rs1731452	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1731454	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1731456	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1731457	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1731458	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1731459	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2219629	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2407783	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2447113	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2447114	0.89[EUR][1000 genomes]
rs2447115	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2447116	0.93[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2614394	1.00[ASN][1000 genomes]
rs2951435	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2951436	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4238089	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4238090	0.94[ASN][1000 genomes]
rs4238091	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4354753	0.97[ASN][1000 genomes]
rs4363674	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4469953	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4537822	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4572198	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4572199	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4609659	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4768049	0.88[EUR][1000 genomes]
rs4768052	0.87[ASN][1000 genomes]
rs4768053	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4768535	0.81[AFR][1000 genomes]
rs4768536	0.89[AFR][1000 genomes]
rs4768538	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4768543	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5019975	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7295151	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7305609	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73096934	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7955615	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7965240	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7965330	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7972025	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899048	chr12:44209423-44307888	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44240400-44293000	Weak transcription	Aorta	Aorta
2	chr12:44256400-44285600	Weak transcription	HSMMtube	muscle
3	chr12:44274600-44286000	Weak transcription	Pancreas	Pancrea
4	chr12:44275000-44281200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr12:44277000-44279600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:44277800-44279600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr12:44278400-44279800	Enhancers	Brain Angular Gyrus	brain
8	chr12:44278400-44280200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr12:44278600-44279800	Enhancers	Brain Cingulate Gyrus	brain
10	chr12:44278600-44285800	Weak transcription	Osteobl	bone
11	chr12:44278600-44287400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr12:44279000-44280200	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr12:44279200-44279800	Enhancers	HMEC	breast
14	chr12:44279200-44286200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr12:44279200-44292600	Weak transcription	Left Ventricle	heart
16	chr12:44279200-44297600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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