Variant report
| Variant | rs4768535 |
|---|---|
| Chromosome Location | chr12:44298917-44298918 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:44291890..44294959-chr12:44297148..44301402,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10785462 | 0.85[AFR][1000 genomes] |
| rs10785463 | 0.83[AFR][1000 genomes] |
| rs1358705 | 0.81[AFR][1000 genomes] |
| rs1614042 | 0.81[AFR][1000 genomes] |
| rs1675756 | 0.81[AFR][1000 genomes] |
| rs1675781 | 0.83[AFR][1000 genomes] |
| rs1675789 | 0.81[AFR][1000 genomes] |
| rs1675790 | 0.81[AFR][1000 genomes] |
| rs1731430 | 0.83[AFR][1000 genomes] |
| rs1731456 | 0.81[AFR][1000 genomes] |
| rs1731457 | 0.81[AFR][1000 genomes] |
| rs1731458 | 0.81[AFR][1000 genomes] |
| rs1731459 | 0.81[AFR][1000 genomes] |
| rs2407783 | 0.85[AFR][1000 genomes] |
| rs4238089 | 0.85[AFR][1000 genomes] |
| rs4238091 | 0.85[AFR][1000 genomes] |
| rs4572198 | 0.85[AFR][1000 genomes] |
| rs4572199 | 0.83[AFR][1000 genomes] |
| rs4609659 | 0.85[AFR][1000 genomes] |
| rs4768534 | 0.82[ASN][1000 genomes] |
| rs4768536 | 0.82[AFR][1000 genomes] |
| rs4768538 | 0.85[AFR][1000 genomes] |
| rs4768539 | 0.81[AFR][1000 genomes] |
| rs5019975 | 0.84[AFR][1000 genomes] |
| rs61930734 | 0.80[ASN][1000 genomes] |
| rs7979391 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899048 | chr12:44209423-44307888 | Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv526719 | chr12:44298417-44315762 | Weak transcription Enhancers Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:44293800-44300800 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 2 | chr12:44298800-44307800 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
