Variant report

Variant	rs4768058
Chromosome Location	chr12:44366132-44366133
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10748386	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10748388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748389	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12231403	1.00[JPT][hapmap]
rs1881928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2407789	0.88[CHB][hapmap];0.90[ASN][1000 genomes]
rs2897765	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4323934	0.96[EUR][1000 genomes]
rs4768060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55996795	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57065008	0.83[EUR][1000 genomes]
rs57781916	0.87[EUR][1000 genomes]
rs6582493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7296132	0.90[ASN][1000 genomes]
rs7297277	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7298388	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs73085755	0.83[EUR][1000 genomes]
rs74084785	0.83[EUR][1000 genomes]
rs7979716	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832390	chr12:44318071-44512114	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1041188	chr12:44331098-44528712	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44342000-44367200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr12:44343600-44376800	Weak transcription	Pancreas	Pancrea
3	chr12:44354400-44367000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr12:44356200-44368000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr12:44358800-44367800	Weak transcription	Esophagus	oesophagus
6	chr12:44360000-44366200	Weak transcription	Fetal Intestine Small	intestine
7	chr12:44361400-44401400	Weak transcription	Aorta	Aorta
8	chr12:44363800-44382400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr12:44364600-44369600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr12:44364600-44370000	Weak transcription	HMEC	breast
11	chr12:44364600-44393200	Weak transcription	Small Intestine	intestine
12	chr12:44364800-44377000	Weak transcription	Left Ventricle	heart
13	chr12:44366000-44366200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr12:44366000-44375600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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