Variant report

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10748386	0.87[EUR][1000 genomes]
rs10748388	0.87[EUR][1000 genomes]
rs10748389	0.82[EUR][1000 genomes]
rs11836308	1.00[ASN][1000 genomes]
rs1881928	0.87[EUR][1000 genomes]
rs2897765	0.87[EUR][1000 genomes]
rs4323934	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4768058	0.87[EUR][1000 genomes]
rs4768060	0.87[EUR][1000 genomes]
rs55996795	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56070984	0.81[EUR][1000 genomes]
rs56737736	1.00[ASN][1000 genomes]
rs57065008	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58703100	1.00[ASN][1000 genomes]
rs61285473	1.00[ASN][1000 genomes]
rs6582493	0.82[EUR][1000 genomes]
rs7297277	0.87[EUR][1000 genomes]
rs7298388	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73085745	0.90[EUR][1000 genomes]
rs73085755	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73085780	0.81[EUR][1000 genomes]
rs73085785	0.81[EUR][1000 genomes]
rs73087608	0.81[EUR][1000 genomes]
rs73087620	0.81[EUR][1000 genomes]
rs73087623	0.81[EUR][1000 genomes]
rs73087628	0.81[EUR][1000 genomes]
rs73087631	0.81[EUR][1000 genomes]
rs73087643	0.81[EUR][1000 genomes]
rs73087674	0.81[EUR][1000 genomes]
rs73286225	1.00[ASN][1000 genomes]
rs73286232	1.00[ASN][1000 genomes]
rs73286235	1.00[ASN][1000 genomes]
rs73286249	1.00[ASN][1000 genomes]
rs73286255	1.00[ASN][1000 genomes]
rs73286259	1.00[ASN][1000 genomes]
rs74084785	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7979716	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832390	chr12:44318071-44512114	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1041188	chr12:44331098-44528712	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44343600-44376800	Weak transcription	Pancreas	Pancrea
2	chr12:44356200-44368000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr12:44358800-44367800	Weak transcription	Esophagus	oesophagus
4	chr12:44361400-44401400	Weak transcription	Aorta	Aorta
5	chr12:44363800-44382400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:44364600-44369600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr12:44364600-44370000	Weak transcription	HMEC	breast
8	chr12:44364600-44393200	Weak transcription	Small Intestine	intestine
9	chr12:44364800-44377000	Weak transcription	Left Ventricle	heart
10	chr12:44366000-44375600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr12:44366200-44373400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr12:44366600-44367800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr12:44366800-44368200	Enhancers	Fetal Heart	heart
14	chr12:44367400-44368000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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