Variant report

Variant	rs4768268
Chromosome Location	chr12:40875963-40875964
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MUC19-1	chr12:40872855-40879178	NONHSAT027728

Extended variants
information (count: 178 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs11564104	1.00[AFR][1000 genomes]
rs11564125	1.00[AFR][1000 genomes]
rs11564145	1.00[AFR][1000 genomes]
rs11564164	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11564165	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11564170	1.00[AFR][1000 genomes]
rs11564229	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11564231	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11564249	1.00[AFR][1000 genomes]
rs11564253	1.00[AFR][1000 genomes]
rs11564255	1.00[AFR][1000 genomes]
rs11564258	1.00[AFR][1000 genomes]
rs11564259	1.00[AFR][1000 genomes]
rs11564264	1.00[AFR][1000 genomes]
rs11564266	1.00[AFR][1000 genomes]
rs12422278	1.00[AFR][1000 genomes]
rs12422390	1.00[AFR][1000 genomes]
rs12422527	1.00[AFR][1000 genomes]
rs12423566	1.00[AFR][1000 genomes]
rs12424424	1.00[AFR][1000 genomes]
rs12425677	1.00[AFR][1000 genomes]
rs12425678	1.00[AFR][1000 genomes]
rs12426903	1.00[AFR][1000 genomes]
rs12427207	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1365762	1.00[AFR][1000 genomes]
rs1365768	1.00[AFR][1000 genomes]
rs1373442	1.00[AFR][1000 genomes]
rs17128353	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17128369	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17128387	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17128457	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17128472	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17128481	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17128487	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17444626	1.00[AFR][1000 genomes]
rs17444646	1.00[AFR][1000 genomes]
rs17444667	1.00[AFR][1000 genomes]
rs17444681	1.00[AFR][1000 genomes]
rs17444688	1.00[AFR][1000 genomes]
rs17444702	1.00[AFR][1000 genomes]
rs17444744	1.00[AFR][1000 genomes]
rs17444751	1.00[AFR][1000 genomes]
rs17444765	1.00[AFR][1000 genomes]
rs17466893	1.00[AFR][1000 genomes]
rs17466907	1.00[AFR][1000 genomes]
rs17466969	1.00[AFR][1000 genomes]
rs17467039	1.00[AFR][1000 genomes]
rs17467081	1.00[AFR][1000 genomes]
rs17467095	1.00[AFR][1000 genomes]
rs17467102	1.00[AFR][1000 genomes]
rs17467109	1.00[AFR][1000 genomes]
rs17467137	1.00[AFR][1000 genomes]
rs17467144	1.00[AFR][1000 genomes]
rs17467164	1.00[AFR][1000 genomes]
rs17467263	1.00[AFR][1000 genomes]
rs17467284	1.00[AFR][1000 genomes]
rs17484541	1.00[AFR][1000 genomes]
rs17492152	1.00[AFR][1000 genomes]
rs17497443	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1844978	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1867435	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2017917	1.00[AFR][1000 genomes]
rs2114566	1.00[AFR][1000 genomes]
rs35462920	1.00[AFR][1000 genomes]
rs35850095	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3789329	1.00[AFR][1000 genomes]
rs3899332	1.00[AFR][1000 genomes]
rs3909731	1.00[AFR][1000 genomes]
rs4767979	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4768248	1.00[AFR][1000 genomes]
rs4768249	1.00[AFR][1000 genomes]
rs4768251	1.00[AFR][1000 genomes]
rs4768252	1.00[AFR][1000 genomes]
rs4768253	1.00[AFR][1000 genomes]
rs4768254	1.00[AFR][1000 genomes]
rs4768264	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4768283	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4768286	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs5015147	1.00[AFR][1000 genomes]
rs5015148	1.00[AFR][1000 genomes]
rs5015149	1.00[AFR][1000 genomes]
rs61736852	1.00[AFR][1000 genomes]
rs7485401	1.00[AFR][1000 genomes]
rs7487209	1.00[AFR][1000 genomes]
rs7487333	1.00[AFR][1000 genomes]
rs7488685	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7489023	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs971616	1.00[AFR][1000 genomes]
rs971617	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:89 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv1848303	chr12:40867011-40887238	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv1850439	chr12:40867211-40887867	Enhancers ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv20428	chr12:40867874-40884927	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv3390786	chr12:40871685-40877783	ZNF genes & repeats Weak transcription Strong transcription	lncRNA	n/a	inside rSNPs	diseases
6	esv3500652	chr12:40872785-40877883	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	inside rSNPs	diseases
7	esv1827225	chr12:40873026-40894172	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	esv1833623	chr12:40873026-40894172	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv821471	chr12:40873057-40885132	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	esv16680	chr12:40873057-40885157	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv511492	chr12:40873251-40876644	Weak transcription ZNF genes & repeats Strong transcription	lncRNA	n/a	inside rSNPs	diseases
12	nsv558607	chr12:40873763-40875983	Strong transcription ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
13	nsv558608	chr12:40873808-40875983	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
14	nsv558610	chr12:40874088-40882121	Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
15	nsv558613	chr12:40874339-40875963	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
16	nsv558614	chr12:40874339-40875983	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
17	nsv558615	chr12:40874339-40878452	Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
18	esv2537704	chr12:40874370-40878297	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
19	esv9331	chr12:40874517-40876753	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
20	esv2244044	chr12:40874546-40876757	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
21	esv2383828	chr12:40874590-40876575	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
22	esv3500630	chr12:40874658-40876532	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
23	esv3500641	chr12:40874663-40876501	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
24	esv3500663	chr12:40874663-40876501	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
25	esv3496031	chr12:40874680-40876512	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
26	esv3496032	chr12:40874680-40876512	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
27	esv17196	chr12:40874832-40875986	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
28	nsv558620	chr12:40874860-40875963	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
29	nsv558621	chr12:40874860-40875983	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
30	nsv558622	chr12:40874860-40876644	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
31	nsv558623	chr12:40874860-40877007	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
32	nsv558624	chr12:40874860-40879854	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
33	nsv558625	chr12:40874860-40880060	Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
34	nsv558626	chr12:40874860-40880558	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
35	esv1809170	chr12:40874860-40882121	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
36	esv1826427	chr12:40874860-40882121	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
37	nsv558627	chr12:40874860-40882121	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
38	esv1820410	chr12:40874860-40883745	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
39	nsv558628	chr12:40874860-40883745	ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
40	esv1834493	chr12:40874860-40884744	ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
41	nsv558629	chr12:40874912-40875963	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
42	nsv558630	chr12:40874912-40875983	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
43	nsv558631	chr12:40874912-40876644	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
44	nsv558632	chr12:40874912-40877007	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
45	nsv558633	chr12:40874912-40878452	Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
46	nsv558634	chr12:40874912-40880060	ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
47	esv1807063	chr12:40874912-40883745	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
48	nsv558635	chr12:40874912-40884881	ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
49	nsv558638	chr12:40874963-40875963	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
50	nsv558639	chr12:40874963-40875983	Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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