Variant report

Variant	rs4768574
Chromosome Location	chr12:45198875-45198876
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10506251	1.00[CHB][hapmap]
rs10506252	1.00[CHB][hapmap]
rs11613236	1.00[ASN][1000 genomes]
rs11615599	1.00[ASN][1000 genomes]
rs17094881	1.00[CHB][hapmap]
rs17094886	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17094892	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17571971	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17572590	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17572765	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17574492	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17574839	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17575480	1.00[ASN][1000 genomes]
rs17650849	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17652715	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17653092	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17653542	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17654244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17654558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17654689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2408044	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4768068	1.00[ASN][1000 genomes]
rs4768070	1.00[ASN][1000 genomes]
rs4768566	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4768570	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6582512	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7135950	1.00[ASN][1000 genomes]
rs7296595	1.00[ASN][1000 genomes]
rs7305652	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs73284070	1.00[ASN][1000 genomes]
rs7955981	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7957292	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7967221	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7974472	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7976217	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378050	chr12:44963059-45264289	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832394	chr12:45077573-45269305	Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	nsv1036926	chr12:45131884-45273648	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv541484	chr12:45131884-45273648	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45151800-45209200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr12:45157000-45205600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr12:45173200-45210200	Weak transcription	Fetal Brain Female	brain
4	chr12:45174600-45205600	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr12:45183200-45199600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr12:45189400-45205800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr12:45191200-45207800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:45197200-45203200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr12:45197800-45199400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:45197800-45200200	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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