Variant report

Variant	rs11615599
Chromosome Location	chr12:45039799-45039800
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10506251	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10506252	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11182567	0.90[EUR][1000 genomes]
rs11182568	0.90[EUR][1000 genomes]
rs11182573	0.90[EUR][1000 genomes]
rs11182575	0.90[EUR][1000 genomes]
rs11182578	0.90[EUR][1000 genomes]
rs11182582	0.90[EUR][1000 genomes]
rs11182593	1.00[EUR][1000 genomes]
rs11612950	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11613236	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1452886	0.90[EUR][1000 genomes]
rs17094881	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094886	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094892	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17571971	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17572590	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17572765	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17574492	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17574839	1.00[ASN][1000 genomes]
rs17575480	1.00[ASN][1000 genomes]
rs17649873	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17650849	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17651646	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17652715	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17653092	1.00[ASN][1000 genomes]
rs17653542	1.00[ASN][1000 genomes]
rs17654244	1.00[ASN][1000 genomes]
rs17654558	1.00[ASN][1000 genomes]
rs17654689	1.00[ASN][1000 genomes]
rs2408044	1.00[ASN][1000 genomes]
rs4768061	1.00[ASN][1000 genomes]
rs4768068	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4768069	0.90[EUR][1000 genomes]
rs4768070	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4768561	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4768566	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4768570	1.00[ASN][1000 genomes]
rs4768574	1.00[ASN][1000 genomes]
rs59098139	0.90[EUR][1000 genomes]
rs61671085	0.90[EUR][1000 genomes]
rs6582510	0.90[EUR][1000 genomes]
rs6582511	0.90[EUR][1000 genomes]
rs6582512	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7135950	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7296595	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7301676	1.00[ASN][1000 genomes]
rs7305652	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73282400	1.00[ASN][1000 genomes]
rs73284070	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73284080	0.90[EUR][1000 genomes]
rs74081513	0.90[EUR][1000 genomes]
rs7955981	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7957292	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7961698	0.90[EUR][1000 genomes]
rs7966845	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7967221	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7974472	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7976217	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3378050	chr12:44963059-45264289	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv430506	chr12:45003342-45072343	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45004800-45043200	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr12:45005000-45044200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr12:45015000-45048400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:45023400-45055600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr12:45031600-45059200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr12:45035000-45041600	Weak transcription	Fetal Brain Male	brain
7	chr12:45035000-45041600	Weak transcription	Fetal Brain Female	brain
8	chr12:45035400-45043200	Weak transcription	Fetal Stomach	stomach
9	chr12:45036600-45046600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:45036800-45043200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links