Variant report

Variant	rs4769800
Chromosome Location	chr13:30588484-30588485
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1122693	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12583495	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12583653	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12585990	0.93[ASN][1000 genomes]
rs17074235	1.00[ASN][1000 genomes]
rs17631642	1.00[CEU][hapmap]
rs17688104	1.00[CEU][hapmap]
rs2253939	0.95[ASN][1000 genomes]
rs2388379	1.00[CEU][hapmap];0.88[TSI][hapmap]
rs35969360	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4769782	1.00[CEU][hapmap]
rs73159394	1.00[ASN][1000 genomes]
rs73159399	1.00[ASN][1000 genomes]
rs73159400	1.00[ASN][1000 genomes]
rs73161504	0.93[ASN][1000 genomes]
rs7999937	0.89[ASN][1000 genomes]
rs8002871	0.83[ASN][1000 genomes]
rs9506249	0.83[ASN][1000 genomes]
rs9550516	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30581000-30592000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr13:30587200-30593400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:30588200-30589800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr13:30588200-30590000	Enhancers	Placenta Amnion	Placenta Amnion
5	chr13:30588400-30588800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links