Variant report

Variant	rs477074
Chromosome Location	chr11:64106056-64106057
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:64006889..64009385-chr11:64105672..64108941,3	K562	blood:
2	chr11:64105286..64107200-chr11:64107652..64110098,2	MCF-7	breast:
3	chr11:63951267..63954594-chr11:64105049..64110612,5	MCF-7	breast:
4	chr11:64094386..64097437-chr11:64105553..64107544,3	K562	blood:
5	chr11:64034810..64036512-chr11:64105222..64107268,2	K562	blood:
6	chr11:64068655..64075946-chr11:64105786..64111623,11	K562	blood:

Variant related genes	Relation type
ENSG00000173153	Chromatin interaction
ENSG00000173486	Chromatin interaction
ENSG00000219435	Chromatin interaction
ENSG00000168439	Chromatin interaction
ENSG00000168071	Chromatin interaction
ENSG00000236935	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1318165	0.83[AFR][1000 genomes]
rs488760	0.80[AFR][1000 genomes]
rs550819	0.80[AFR][1000 genomes]
rs558105	0.83[AFR][1000 genomes]
rs558864	0.91[AFR][1000 genomes]
rs565221	0.83[AFR][1000 genomes]
rs566049	0.80[AFR][1000 genomes]
rs571379	0.83[AFR][1000 genomes]
rs594241	0.80[AFR][1000 genomes]
rs614047	0.83[AFR][1000 genomes]
rs7941847	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897631	chr11:63664882-64129722	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
2	esv1802079	chr11:63746066-64151373	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	247 gene(s)	inside rSNPs	diseases
3	nsv897646	chr11:63754986-64150370	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	245 gene(s)	inside rSNPs	diseases
4	nsv1035875	chr11:63800238-64132030	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	234 gene(s)	inside rSNPs	diseases
5	nsv897660	chr11:63860826-64125142	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	231 gene(s)	inside rSNPs	diseases
6	nsv897661	chr11:63863405-64129722	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
7	nsv897662	chr11:63889749-64150370	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	237 gene(s)	inside rSNPs	diseases
8	nsv897664	chr11:63919742-64150370	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	237 gene(s)	inside rSNPs	diseases
9	nsv869944	chr11:63932152-64123062	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
10	nsv897671	chr11:63964657-64150370	Active TSS Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	179 gene(s)	inside rSNPs	diseases
11	nsv832186	chr11:63972260-64170059	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	180 gene(s)	inside rSNPs	diseases
12	esv1802320	chr11:63987425-64154633	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
13	nsv897679	chr11:63994692-64150370	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
14	nsv897682	chr11:63999529-64170500	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
15	nsv1043277	chr11:64002997-64132030	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
16	nsv897685	chr11:64048912-64150370	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	102 gene(s)	inside rSNPs	diseases
17	nsv555192	chr11:64097233-64111928	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	n/a
18	nsv818840	chr11:64097233-64125142	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
19	nsv818841	chr11:64097233-64129722	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64087000-64108200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:64089400-64106800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr11:64091600-64106400	Weak transcription	Primary T cells from cord blood	blood
4	chr11:64099600-64107600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:64099800-64106400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr11:64099800-64106400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr11:64099800-64106400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr11:64099800-64106400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr11:64099800-64106800	Weak transcription	Thymus	Thymus
10	chr11:64099800-64107600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr11:64099800-64108000	Weak transcription	Brain Anterior Caudate	brain
12	chr11:64099800-64108000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr11:64099800-64108200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr11:64099800-64108400	Weak transcription	Left Ventricle	heart
15	chr11:64099800-64109600	Weak transcription	Liver	Liver
16	chr11:64100000-64106400	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr11:64100000-64106400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr11:64100000-64106600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr11:64100000-64107000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr11:64100000-64109000	Weak transcription	Pancreas	Pancrea
21	chr11:64100200-64106400	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr11:64100200-64107000	Weak transcription	Esophagus	oesophagus
23	chr11:64100200-64108000	Weak transcription	Lung	lung
24	chr11:64100200-64108200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr11:64101000-64106200	Enhancers	K562	blood
26	chr11:64102400-64107200	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr11:64102800-64107000	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr11:64103000-64106400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr11:64103000-64106800	Weak transcription	Duodenum Mucosa	Duodenum
30	chr11:64103000-64107000	Weak transcription	Gastric	stomach
31	chr11:64103000-64107200	Weak transcription	Fetal Muscle Trunk	muscle
32	chr11:64103000-64107400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:64103000-64107800	Weak transcription	Right Ventricle	heart
34	chr11:64103000-64108600	Weak transcription	A549	lung
35	chr11:64103000-64109600	Weak transcription	Right Atrium	heart
36	chr11:64103200-64106200	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr11:64103200-64106600	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr11:64103200-64106800	Weak transcription	Stomach Smooth Muscle	stomach
39	chr11:64103200-64107200	Weak transcription	Spleen	Spleen
40	chr11:64103400-64106600	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr11:64103400-64107400	Weak transcription	Placenta	Placenta
42	chr11:64103400-64109600	Weak transcription	NH-A	brain
43	chr11:64103800-64109400	Weak transcription	NHEK	skin
44	chr11:64104000-64107400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:64104000-64108800	Weak transcription	HMEC	breast
46	chr11:64104200-64106800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr11:64104200-64106800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr11:64104200-64108600	Weak transcription	Stomach Mucosa	stomach
49	chr11:64104800-64106200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr11:64104800-64107400	Enhancers	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links