Variant report

Variant	rs566049
Chromosome Location	chr11:64088435-64088436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr11:64088171-64089197	HEK293-T-REx	kidney:	n/a	n/a
2	POLR2A	chr11:64087885-64088617	Hela-S3	cervix:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64088399..64090085-chr11:64108067..64109781,2	K562	blood:
2	chr11:64020572..64023323-chr11:64085691..64088535,2	K562	blood:
3	chr11:64080424..64082742-chr11:64087836..64089849,2	MCF-7	breast:
4	chr11:64087500..64089576-chr11:64172197..64174261,2	K562	blood:
5	chr11:64088256..64090312-chr11:64092623..64094945,2	MCF-7	breast:
6	chr11:64087466..64090452-chr11:64106941..64109054,2	MCF-7	breast:
7	chr11:64033536..64040775-chr11:64080684..64088458,16	K562	blood:

No data

Variant related genes	Relation type
TRMT112	TF binding region
ENSG00000173264	Chromatin interaction
ENSG00000168071	Chromatin interaction
ENSG00000002330	Chromatin interaction
ENSG00000173153	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1199175	0.83[AMR][1000 genomes]
rs1318165	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2510067	0.80[AFR][1000 genomes]
rs477074	0.80[AFR][1000 genomes]
rs477909	0.83[AMR][1000 genomes]
rs483515	0.83[AMR][1000 genomes]
rs484384	0.83[AMR][1000 genomes]
rs488760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs494403	0.83[AMR][1000 genomes]
rs512372	0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs513264	0.83[AMR][1000 genomes]
rs523525	0.83[AMR][1000 genomes]
rs545916	0.83[AMR][1000 genomes]
rs550819	0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs558105	0.81[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs558864	0.87[ASW][hapmap];0.94[LWK][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs564687	0.83[AMR][1000 genomes]
rs565221	0.94[LWK][hapmap];0.84[MKK][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs571379	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs590103	0.83[AMR][1000 genomes]
rs594241	0.86[AFR][1000 genomes]
rs601845	0.83[AMR][1000 genomes]
rs614047	0.94[LWK][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs620645	0.82[YRI][hapmap]
rs632439	0.89[ASW][hapmap];0.86[MKK][hapmap];0.93[YRI][hapmap]
rs648220	0.83[AMR][1000 genomes]
rs649463	0.83[AMR][1000 genomes]
rs652611	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs676931	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs681797	0.84[MKK][hapmap];0.83[AMR][1000 genomes]
rs687735	0.83[AFR][1000 genomes]
rs7938623	0.82[YRI][hapmap]
rs7941847	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897631	chr11:63664882-64129722	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
2	esv1802079	chr11:63746066-64151373	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	247 gene(s)	inside rSNPs	diseases
3	nsv897646	chr11:63754986-64150370	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	245 gene(s)	inside rSNPs	diseases
4	nsv1035875	chr11:63800238-64132030	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	234 gene(s)	inside rSNPs	diseases
5	nsv897660	chr11:63860826-64125142	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	231 gene(s)	inside rSNPs	diseases
6	nsv897661	chr11:63863405-64129722	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
7	nsv897662	chr11:63889749-64150370	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	237 gene(s)	inside rSNPs	diseases
8	nsv897664	chr11:63919742-64150370	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	237 gene(s)	inside rSNPs	diseases
9	nsv869944	chr11:63932152-64123062	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
10	nsv468593	chr11:63941734-64089874	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
11	nsv555185	chr11:63941734-64089874	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
12	nsv555186	chr11:63949095-64097233	Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
13	nsv897669	chr11:63964657-64089874	Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
14	nsv897670	chr11:63964657-64097233	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
15	nsv897671	chr11:63964657-64150370	Active TSS Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	179 gene(s)	inside rSNPs	diseases
16	nsv832186	chr11:63972260-64170059	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	180 gene(s)	inside rSNPs	diseases
17	esv1802320	chr11:63987425-64154633	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
18	nsv897679	chr11:63994692-64150370	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
19	nsv897682	chr11:63999529-64170500	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
20	nsv1043277	chr11:64002997-64132030	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
21	nsv897685	chr11:64048912-64150370	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	102 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64086200-64090200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:64086800-64096600	Weak transcription	Right Atrium	heart
3	chr11:64086800-64099000	Weak transcription	Small Intestine	intestine
4	chr11:64087000-64088800	Weak transcription	NH-A	brain
5	chr11:64087000-64089000	Transcr. at gene 5' and 3'	Hela-S3	cervix
6	chr11:64087000-64089200	Genic enhancers	Placenta Amnion	Placenta Amnion
7	chr11:64087000-64089800	Enhancers	Stomach Mucosa	stomach
8	chr11:64087000-64091000	Genic enhancers	Fetal Intestine Small	intestine
9	chr11:64087000-64091400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:64087000-64091600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr11:64087000-64097200	Weak transcription	HSMMtube	muscle
12	chr11:64087000-64099000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr11:64087000-64099000	Weak transcription	HSMM	muscle
14	chr11:64087000-64108200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:64087200-64088600	Weak transcription	Right Ventricle	heart
16	chr11:64087200-64088600	Weak transcription	A549	lung
17	chr11:64087200-64089000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:64087200-64089000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr11:64087200-64089800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr11:64087200-64089800	Weak transcription	Ovary	ovary
21	chr11:64087200-64090400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:64087200-64090400	Weak transcription	Primary B cells from cord blood	blood
23	chr11:64087200-64091400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr11:64087200-64091400	Strong transcription	Fetal Muscle Trunk	muscle
25	chr11:64087200-64091600	Strong transcription	Fetal Muscle Leg	muscle
26	chr11:64087200-64091600	Strong transcription	Fetal Stomach	stomach
27	chr11:64087200-64098800	Weak transcription	Primary hematopoietic stem cells	blood
28	chr11:64087200-64099000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr11:64087200-64099000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr11:64087400-64088800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:64087400-64089000	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr11:64087400-64089200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:64087400-64089200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr11:64087400-64089200	Strong transcription	HepG2	liver
35	chr11:64087400-64089600	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr11:64087400-64089600	Weak transcription	Primary B cells from peripheral blood	blood
37	chr11:64087400-64089600	Weak transcription	Brain Angular Gyrus	brain
38	chr11:64087400-64089800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr11:64087400-64090000	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr11:64087400-64090000	Weak transcription	Fetal Brain Male	brain
41	chr11:64087400-64090200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr11:64087400-64090200	Strong transcription	Spleen	Spleen
43	chr11:64087400-64090400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:64087400-64090600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr11:64087400-64091000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr11:64087400-64091000	Genic enhancers	HMEC	breast
47	chr11:64087400-64091200	Strong transcription	Adipose Nuclei	Adipose
48	chr11:64087400-64091600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr11:64087400-64093200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr11:64087400-64096800	Weak transcription	Psoas Muscle	Psoas

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