Variant report

Variant	rs4771274
Chromosome Location	chr13:98193456-98193457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1159277	0.88[CEU][hapmap];0.88[CHB][hapmap];0.82[GIH][hapmap];1.00[LWK][hapmap]
rs11842356	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12868261	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12873919	0.88[CHB][hapmap]
rs2389908	0.88[CEU][hapmap];0.88[CHB][hapmap]
rs4143080	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71433408	0.85[ASN][1000 genomes]
rs72640855	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4771274	SLC15A1	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98190600-98193800	Weak transcription	Lung	lung
2	chr13:98191800-98195200	Enhancers	Fetal Lung	lung
3	chr13:98192400-98194600	Weak transcription	Fetal Heart	heart
4	chr13:98192400-98196000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr13:98192400-98196600	Enhancers	Fetal Stomach	stomach
6	chr13:98192800-98193600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr13:98192800-98194200	Weak transcription	Fetal Kidney	kidney
8	chr13:98192800-98195400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr13:98193000-98194400	Weak transcription	NHDF-Ad	bronchial
10	chr13:98193000-98195600	Enhancers	Fetal Muscle Leg	muscle
11	chr13:98193400-98194800	Enhancers	Left Ventricle	heart
12	chr13:98193400-98197600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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