Variant report

Variant	rs4771670
Chromosome Location	chr13:111000188-111000189
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:111000060..111002459-chr13:111005280..111006914,2	MCF-7	breast:
2	chr13:110998747..111001363-chr13:111017534..111020102,2	MCF-7	breast:
3	chr13:110975551..110977167-chr13:110999364..111001106,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs4773158	0.87[EUR][1000 genomes]
rs4773161	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57274138	0.93[AMR][1000 genomes]
rs58900271	0.93[AMR][1000 genomes]
rs59030659	0.93[AMR][1000 genomes]
rs59530640	0.93[AMR][1000 genomes]
rs6492262	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9588143	0.93[AMR][1000 genomes]
rs9588144	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046423	chr13:110936104-111286607	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1049454	chr13:110950768-111006547	Strong transcription Flanking Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110972600-111007200	Weak transcription	Gastric	stomach
2	chr13:110980200-111002800	Weak transcription	Fetal Brain Male	brain
3	chr13:110992000-111001600	Weak transcription	Brain Substantia Nigra	brain
4	chr13:110993800-111000600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:110993800-111007200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr13:110994000-111004400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr13:110994000-111019600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr13:110994400-111002800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr13:110994400-111007200	Weak transcription	Fetal Kidney	kidney
10	chr13:110995200-111005200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr13:110995200-111007000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr13:110995400-111004200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr13:110995600-111005800	Weak transcription	Fetal Lung	lung
14	chr13:110996000-111009800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr13:110997000-111001000	Enhancers	Left Ventricle	heart
16	chr13:110997800-111000600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr13:110997800-111000600	Enhancers	HMEC	breast
18	chr13:110997800-111002800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr13:110998000-111000800	Enhancers	Spleen	Spleen
20	chr13:110998000-111001800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr13:110998000-111002200	Enhancers	Right Ventricle	heart
22	chr13:110998000-111002800	Enhancers	Fetal Heart	heart
23	chr13:110998200-111000400	Enhancers	Lung	lung
24	chr13:110998200-111000800	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr13:110998400-111000200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr13:110998400-111000800	Enhancers	Placenta	Placenta
27	chr13:110998400-111000800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
28	chr13:110998600-111000200	Enhancers	Placenta Amnion	Placenta Amnion
29	chr13:110998600-111000400	Genic enhancers	Fetal Muscle Leg	muscle
30	chr13:110998600-111001000	Enhancers	NHLF	lung
31	chr13:110998600-111003000	Enhancers	Colon Smooth Muscle	Colon
32	chr13:110998800-111000400	Enhancers	HUVEC	blood vessel
33	chr13:110998800-111001200	Enhancers	NHDF-Ad	bronchial
34	chr13:110999000-111000400	Flanking Active TSS	A549	lung
35	chr13:110999000-111000600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr13:110999000-111000600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr13:110999000-111000600	Enhancers	Esophagus	oesophagus
38	chr13:110999000-111000800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr13:110999000-111002200	Enhancers	Adipose Nuclei	Adipose
40	chr13:110999000-111002800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr13:110999200-111000200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr13:110999200-111000400	Enhancers	Pancreas	Pancrea
43	chr13:110999200-111000600	Enhancers	Ovary	ovary
44	chr13:110999200-111001800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr13:110999200-111003600	Enhancers	Right Atrium	heart
46	chr13:110999400-111000800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr13:110999400-111000800	Flanking Active TSS	NHEK	skin
48	chr13:110999600-111000200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr13:110999600-111000200	Strong transcription	Fetal Intestine Small	intestine
50	chr13:110999600-111000200	Enhancers	Psoas Muscle	Psoas

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