Variant report

Variant	rs4773158
Chromosome Location	chr13:110992654-110992655
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4771670	0.87[EUR][1000 genomes]
rs4773161	0.87[EUR][1000 genomes]
rs4773162	0.83[AMR][1000 genomes]
rs6492262	0.87[EUR][1000 genomes]
rs7331163	0.83[AMR][1000 genomes]
rs7336547	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046423	chr13:110936104-111286607	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1049454	chr13:110950768-111006547	Strong transcription Flanking Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110972600-111007200	Weak transcription	Gastric	stomach
2	chr13:110972800-110995000	Weak transcription	Esophagus	oesophagus
3	chr13:110974000-110993000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:110980200-110993000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr13:110980200-110995400	Weak transcription	A549	lung
6	chr13:110980200-111002800	Weak transcription	Fetal Brain Male	brain
7	chr13:110983200-110992800	Enhancers	Colon Smooth Muscle	Colon
8	chr13:110986600-110993000	Enhancers	Right Atrium	heart
9	chr13:110986600-110994400	Enhancers	Ovary	ovary
10	chr13:110987600-110993200	Enhancers	Left Ventricle	heart
11	chr13:110987600-110993800	Weak transcription	NHEK	skin
12	chr13:110988200-110994200	Enhancers	Fetal Heart	heart
13	chr13:110988200-110996000	Enhancers	Right Ventricle	heart
14	chr13:110988600-110994400	Enhancers	NHDF-Ad	bronchial
15	chr13:110988800-110992800	Enhancers	Adipose Nuclei	Adipose
16	chr13:110988800-110993000	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr13:110988800-110993000	Enhancers	HUVEC	blood vessel
18	chr13:110988800-110994200	Enhancers	Aorta	Aorta
19	chr13:110989200-110994800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr13:110989600-110994400	Enhancers	Fetal Kidney	kidney
21	chr13:110989600-110995200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr13:110989800-110993600	Weak transcription	Psoas Muscle	Psoas
23	chr13:110989800-110999200	Weak transcription	Pancreas	Pancrea
24	chr13:110990000-110992800	Weak transcription	Duodenum Mucosa	Duodenum
25	chr13:110990000-110993800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr13:110990200-110992800	Weak transcription	HSMM	muscle
27	chr13:110990200-110994600	Enhancers	Fetal Stomach	stomach
28	chr13:110990400-110993600	Weak transcription	Stomach Mucosa	stomach
29	chr13:110990600-110994000	Enhancers	Fetal Muscle Trunk	muscle
30	chr13:110990600-110994200	Enhancers	Lung	lung
31	chr13:110990800-110992800	Weak transcription	Brain Cingulate Gyrus	brain
32	chr13:110990800-110993400	Weak transcription	Fetal Intestine Small	intestine
33	chr13:110991000-110993000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr13:110991200-110992800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr13:110991200-110993000	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr13:110991200-110995000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr13:110991400-110992800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr13:110991400-110992800	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr13:110991400-110993000	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr13:110991400-110993800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr13:110991400-110994200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr13:110991400-110995400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr13:110991400-110995800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr13:110991600-110992800	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr13:110991600-110992800	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr13:110991600-110992800	Weak transcription	Brain Hippocampus Middle	brain
47	chr13:110991600-110992800	Weak transcription	Fetal Lung	lung
48	chr13:110991600-110992800	Weak transcription	HSMMtube	muscle
49	chr13:110991600-110993800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr13:110991600-110995400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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