Variant report

Variant	rs4773162
Chromosome Location	chr13:110999069-110999070
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110998747..111001363-chr13:111017534..111020102,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4773158	0.83[AMR][1000 genomes]
rs4773163	0.95[YRI][hapmap];0.95[AFR][1000 genomes]
rs7331163	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7336547	0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046423	chr13:110936104-111286607	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1049454	chr13:110950768-111006547	Strong transcription Flanking Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110972600-111007200	Weak transcription	Gastric	stomach
2	chr13:110980200-111002800	Weak transcription	Fetal Brain Male	brain
3	chr13:110989800-110999200	Weak transcription	Pancreas	Pancrea
4	chr13:110992000-110999200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr13:110992000-111001600	Weak transcription	Brain Substantia Nigra	brain
6	chr13:110993800-111000600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr13:110993800-111007200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr13:110994000-110999800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:110994000-110999800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr13:110994000-111004400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr13:110994000-111019600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr13:110994200-110999200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr13:110994200-110999200	Weak transcription	HSMM	muscle
14	chr13:110994200-110999400	Weak transcription	Fetal Intestine Large	intestine
15	chr13:110994200-110999600	Weak transcription	HSMMtube	muscle
16	chr13:110994400-110999400	Weak transcription	Fetal Intestine Small	intestine
17	chr13:110994400-111002800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr13:110994400-111007200	Weak transcription	Fetal Kidney	kidney
19	chr13:110994800-110999600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr13:110995200-111005200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr13:110995200-111007000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr13:110995400-111004200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr13:110995600-111005800	Weak transcription	Fetal Lung	lung
24	chr13:110996000-110999200	Weak transcription	Ovary	ovary
25	chr13:110996000-110999200	Weak transcription	Right Atrium	heart
26	chr13:110996000-110999400	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr13:110996000-110999600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr13:110996000-110999600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr13:110996000-111009800	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr13:110996200-110999200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr13:110996200-110999200	Weak transcription	Aorta	Aorta
32	chr13:110996200-110999800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr13:110996400-110999800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr13:110996800-110999200	Strong transcription	Fetal Stomach	stomach
35	chr13:110997000-111001000	Enhancers	Left Ventricle	heart
36	chr13:110997800-111000600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr13:110997800-111000600	Enhancers	HMEC	breast
38	chr13:110997800-111002800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr13:110998000-110999400	Enhancers	Rectal Mucosa Donor 29	rectum
40	chr13:110998000-111000000	Genic enhancers	Fetal Muscle Trunk	muscle
41	chr13:110998000-111000800	Enhancers	Spleen	Spleen
42	chr13:110998000-111001800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr13:110998000-111002200	Enhancers	Right Ventricle	heart
44	chr13:110998000-111002800	Enhancers	Fetal Heart	heart
45	chr13:110998200-110999200	Weak transcription	Rectal Smooth Muscle	rectum
46	chr13:110998200-110999400	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr13:110998200-110999600	Enhancers	NH-A	brain
48	chr13:110998200-111000400	Enhancers	Lung	lung
49	chr13:110998200-111000800	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr13:110998400-110999400	Enhancers	Rectal Mucosa Donor 31	rectum

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