Variant report

Variant	rs7331163
Chromosome Location	chr13:110995641-110995642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4773158	0.83[AMR][1000 genomes]
rs4773162	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4773163	0.95[YRI][hapmap];0.95[AFR][1000 genomes]
rs7336547	0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046423	chr13:110936104-111286607	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1049454	chr13:110950768-111006547	Strong transcription Flanking Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110972600-111007200	Weak transcription	Gastric	stomach
2	chr13:110980200-111002800	Weak transcription	Fetal Brain Male	brain
3	chr13:110988200-110996000	Enhancers	Right Ventricle	heart
4	chr13:110989800-110999200	Weak transcription	Pancreas	Pancrea
5	chr13:110991400-110995800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr13:110991600-110995800	Weak transcription	Brain Anterior Caudate	brain
7	chr13:110992000-110999200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr13:110992000-111001600	Weak transcription	Brain Substantia Nigra	brain
9	chr13:110992800-110996000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr13:110993000-110996000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr13:110993000-110997200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr13:110993200-110995800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr13:110993400-110996000	Enhancers	Right Atrium	heart
14	chr13:110993800-111000600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr13:110993800-111007200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr13:110994000-110999800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr13:110994000-110999800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr13:110994000-111004400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr13:110994000-111019600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr13:110994200-110995800	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr13:110994200-110996000	Weak transcription	Osteobl	bone
22	chr13:110994200-110996200	Enhancers	Left Ventricle	heart
23	chr13:110994200-110998000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr13:110994200-110999000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr13:110994200-110999000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr13:110994200-110999200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr13:110994200-110999200	Weak transcription	HSMM	muscle
28	chr13:110994200-110999400	Weak transcription	Fetal Intestine Large	intestine
29	chr13:110994200-110999600	Weak transcription	HSMMtube	muscle
30	chr13:110994400-110996200	Enhancers	NH-A	brain
31	chr13:110994400-110998600	Weak transcription	NHLF	lung
32	chr13:110994400-110998800	Weak transcription	NHDF-Ad	bronchial
33	chr13:110994400-110999400	Weak transcription	Fetal Intestine Small	intestine
34	chr13:110994400-111002800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr13:110994400-111007200	Weak transcription	Fetal Kidney	kidney
36	chr13:110994600-110998800	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr13:110994800-110995800	Weak transcription	Brain Hippocampus Middle	brain
38	chr13:110994800-110995800	Weak transcription	Stomach Mucosa	stomach
39	chr13:110994800-110996000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr13:110994800-110996000	Genic enhancers	Fetal Stomach	stomach
41	chr13:110994800-110996000	Flanking Active TSS	Stomach Smooth Muscle	stomach
42	chr13:110994800-110996200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr13:110994800-110996200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr13:110994800-110996200	Enhancers	Fetal Heart	heart
45	chr13:110994800-110999600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr13:110995000-110996000	Enhancers	Ovary	ovary
47	chr13:110995000-110996400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr13:110995000-110997000	Enhancers	Esophagus	oesophagus
49	chr13:110995000-110997400	Enhancers	Colon Smooth Muscle	Colon
50	chr13:110995000-110999000	Weak transcription	Adipose Nuclei	Adipose

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