Variant report

Variant	rs4772442
Chromosome Location	chr13:88521775-88521776
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1372746	0.82[GIH][hapmap];0.91[TSI][hapmap]
rs4533140	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4551890	0.84[EUR][1000 genomes]
rs4594109	0.83[EUR][1000 genomes]
rs7994228	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9514009	0.84[EUR][1000 genomes]
rs9518728	0.83[EUR][1000 genomes]
rs9518812	0.82[EUR][1000 genomes]
rs9554871	0.84[EUR][1000 genomes]
rs9788378	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832673	chr13:88431110-88607319	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:88519800-88524800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr13:88521400-88525200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr13:88521600-88522400	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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