Variant report

Variant	rs9788378
Chromosome Location	chr13:88520405-88520406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1372746	0.85[CHB][hapmap];0.83[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.91[TSI][hapmap]
rs4533140	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4551890	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4594109	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4772442	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7994228	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9514009	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9518728	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9518812	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9554871	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832673	chr13:88431110-88607319	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:88519800-88524800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr13:88520400-88520800	Enhancers	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links