Variant report

Variant	rs4773159
Chromosome Location	chr13:110994093-110994094
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4773160	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4773161	0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046423	chr13:110936104-111286607	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1049454	chr13:110950768-111006547	Strong transcription Flanking Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110972600-111007200	Weak transcription	Gastric	stomach
2	chr13:110972800-110995000	Weak transcription	Esophagus	oesophagus
3	chr13:110980200-110995400	Weak transcription	A549	lung
4	chr13:110980200-111002800	Weak transcription	Fetal Brain Male	brain
5	chr13:110986600-110994400	Enhancers	Ovary	ovary
6	chr13:110988200-110994200	Enhancers	Fetal Heart	heart
7	chr13:110988200-110996000	Enhancers	Right Ventricle	heart
8	chr13:110988600-110994400	Enhancers	NHDF-Ad	bronchial
9	chr13:110988800-110994200	Enhancers	Aorta	Aorta
10	chr13:110989200-110994800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:110989600-110994400	Enhancers	Fetal Kidney	kidney
12	chr13:110989600-110995200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr13:110989800-110999200	Weak transcription	Pancreas	Pancrea
14	chr13:110990200-110994600	Enhancers	Fetal Stomach	stomach
15	chr13:110990600-110994200	Enhancers	Lung	lung
16	chr13:110991200-110995000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr13:110991400-110994200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr13:110991400-110995400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr13:110991400-110995800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr13:110991600-110995400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr13:110991600-110995800	Weak transcription	Brain Anterior Caudate	brain
22	chr13:110992000-110999200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr13:110992000-111001600	Weak transcription	Brain Substantia Nigra	brain
24	chr13:110992400-110994200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr13:110992400-110994200	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr13:110992400-110994200	Flanking Active TSS	Stomach Smooth Muscle	stomach
27	chr13:110992400-110994800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr13:110992400-110995000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr13:110992600-110994200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr13:110992600-110994200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr13:110992600-110994200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
32	chr13:110992600-110994200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr13:110992600-110994200	Enhancers	Fetal Intestine Large	intestine
34	chr13:110992600-110994400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr13:110992600-110994600	Enhancers	Muscle Satellite Cultured Cells	--
36	chr13:110992600-110995400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr13:110992600-110995600	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr13:110992800-110994200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr13:110992800-110994200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr13:110992800-110994200	Enhancers	HSMMtube	muscle
41	chr13:110992800-110994400	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr13:110992800-110994400	Flanking Active TSS	Colon Smooth Muscle	Colon
43	chr13:110992800-110994400	Flanking Active TSS	Rectal Smooth Muscle	rectum
44	chr13:110992800-110995200	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr13:110992800-110995400	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr13:110992800-110996000	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr13:110993000-110994200	Enhancers	Rectal Mucosa Donor 29	rectum
48	chr13:110993000-110994400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr13:110993000-110994400	Flanking Active TSS	NH-A	brain
50	chr13:110993000-110995400	Enhancers	H1 Cell Line	embryonic stem cell

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