Variant report

Variant	rs4773160
Chromosome Location	chr13:110994760-110994761
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1041317	1.00[MEX][hapmap]
rs4773159	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4773161	0.87[ASW][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6492262	1.00[MEX][hapmap]
rs9583487	1.00[MEX][hapmap]
rs9588143	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046423	chr13:110936104-111286607	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1049454	chr13:110950768-111006547	Strong transcription Flanking Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110972600-111007200	Weak transcription	Gastric	stomach
2	chr13:110972800-110995000	Weak transcription	Esophagus	oesophagus
3	chr13:110980200-110995400	Weak transcription	A549	lung
4	chr13:110980200-111002800	Weak transcription	Fetal Brain Male	brain
5	chr13:110988200-110996000	Enhancers	Right Ventricle	heart
6	chr13:110989200-110994800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:110989600-110995200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr13:110989800-110999200	Weak transcription	Pancreas	Pancrea
9	chr13:110991200-110995000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr13:110991400-110995400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr13:110991400-110995800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr13:110991600-110995400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr13:110991600-110995800	Weak transcription	Brain Anterior Caudate	brain
14	chr13:110992000-110999200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr13:110992000-111001600	Weak transcription	Brain Substantia Nigra	brain
16	chr13:110992400-110994800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr13:110992400-110995000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr13:110992600-110995400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr13:110992600-110995600	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr13:110992800-110995200	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr13:110992800-110995400	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr13:110992800-110996000	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr13:110993000-110995400	Enhancers	H1 Cell Line	embryonic stem cell
24	chr13:110993000-110996000	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr13:110993000-110997200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr13:110993200-110995200	Enhancers	Placenta	Placenta
27	chr13:110993200-110995800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr13:110993400-110994800	Weak transcription	Brain Cingulate Gyrus	brain
29	chr13:110993400-110996000	Enhancers	Right Atrium	heart
30	chr13:110993600-110994800	Enhancers	Stomach Mucosa	stomach
31	chr13:110993600-110995200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr13:110993600-110995200	Enhancers	HMEC	breast
33	chr13:110993800-110994800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr13:110993800-110994800	Weak transcription	Spleen	Spleen
35	chr13:110993800-110995000	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr13:110993800-110995000	Enhancers	Fetal Brain Female	brain
37	chr13:110993800-110995200	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr13:110993800-110995200	Enhancers	NHEK	skin
39	chr13:110993800-111000600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr13:110993800-111007200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr13:110994000-110994800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr13:110994000-110995200	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr13:110994000-110995200	Genic enhancers	Fetal Muscle Trunk	muscle
44	chr13:110994000-110995600	Weak transcription	Colonic Mucosa	Colon
45	chr13:110994000-110995600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
46	chr13:110994000-110999800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr13:110994000-110999800	Enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr13:110994000-111004400	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr13:110994000-111019600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr13:110994200-110994800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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