Variant report
Variant | rs4773676 |
---|---|
Chromosome Location | chr13:92849605-92849606 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12583936 | 0.86[CEU][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.83[MKK][hapmap];0.83[TSI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs12876819 | 0.93[CHD][hapmap];0.82[ASN][1000 genomes] |
rs17233753 | 0.86[CEU][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs1998890 | 0.85[JPT][hapmap] |
rs4238302 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4597182 | 0.91[CEU][hapmap];0.82[GIH][hapmap];0.80[JPT][hapmap];0.93[MEX][hapmap];0.83[TSI][hapmap] |
rs61967886 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6492591 | 0.81[CHD][hapmap];0.85[JPT][hapmap] |
rs7326993 | 0.85[ASN][1000 genomes] |
rs7990793 | 0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs7992260 | 1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs874795 | 0.90[CHD][hapmap] |
rs9516020 | 0.93[CHD][hapmap];0.81[JPT][hapmap] |
rs9556159 | 0.90[CEU][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs9560962 | 0.91[CEU][hapmap] |
rs9560963 | 0.91[CEU][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs9560967 | 0.91[CEU][hapmap] |
rs9560979 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2756005 | chr13:92584199-93080799 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
2 | nsv456066 | chr13:92694581-92884370 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
3 | nsv562723 | chr13:92694581-92884370 | Flanking Active TSS Active TSS Enhancers Weak transcription | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
4 | nsv1035365 | chr13:92805325-92926114 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
5 | nsv1053468 | chr13:92814581-92893231 | Enhancers Active TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:92848800-92850200 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
2 | chr13:92849600-92854600 | Weak transcription | Fetal Lung | lung |