Variant report
| Variant | rs9556159 |
|---|---|
| Chromosome Location | chr13:92838027-92838028 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr13:92838013-92838098 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| FABP5P4 | TF binding region |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs12583936 | 0.95[CEU][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs17233753 | 0.95[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4238302 | 0.90[CEU][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs4516082 | 0.88[CEU][hapmap] |
| rs4597182 | 1.00[CEU][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap] |
| rs4773676 | 0.90[CEU][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs61967886 | 0.95[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs7990793 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs7992260 | 0.91[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs9523527 | 0.94[CHB][hapmap];0.90[ASN][1000 genomes] |
| rs9560962 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs9560963 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs9560967 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs9560979 | 0.90[CEU][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2756005 | chr13:92584199-93080799 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv456066 | chr13:92694581-92884370 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv562723 | chr13:92694581-92884370 | Flanking Active TSS Active TSS Enhancers Weak transcription | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1035365 | chr13:92805325-92926114 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv1053468 | chr13:92814581-92893231 | Enhancers Active TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
