Variant report

Variant	rs4774279
Chromosome Location	chr15:57973398-57973399
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11071340	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11071341	0.82[MEX][hapmap];1.00[TSI][hapmap]
rs11071342	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12440250	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12441026	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1346120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.86[YRI][hapmap];0.87[AMR][1000 genomes]
rs1540397	0.87[AFR][1000 genomes]
rs1593439	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs1690332	1.00[CEU][hapmap]
rs1834487	1.00[JPT][hapmap]
rs1946356	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1946357	1.00[JPT][hapmap]
rs2018558	1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.82[AMR][1000 genomes]
rs2081515	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2098890	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2414516	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2451181	1.00[CEU][hapmap]
rs2453096	1.00[CEU][hapmap]
rs2453097	1.00[CEU][hapmap]
rs2453098	1.00[CEU][hapmap]
rs2470359	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2733606	1.00[CHD][hapmap];1.00[TSI][hapmap]
rs2899603	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2934433	1.00[CEU][hapmap]
rs4564513	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap]
rs4774280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4774980	1.00[JPT][hapmap]
rs6493940	1.00[JPT][hapmap]
rs6493941	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6493942	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7173197	1.00[CEU][hapmap]
rs7181645	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs724785	1.00[CEU][hapmap]
rs8023855	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8024008	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs933839	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9920996	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9921015	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv530682	chr15:57912502-58108285	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57933400-57982600	Weak transcription	Esophagus	oesophagus
2	chr15:57959600-57982600	Weak transcription	Lung	lung
3	chr15:57960400-57975000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr15:57960800-57985000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr15:57967200-57974800	Weak transcription	Spleen	Spleen
6	chr15:57967800-57976800	Weak transcription	Pancreas	Pancrea
7	chr15:57968200-57976600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr15:57968200-57976800	Weak transcription	Fetal Kidney	kidney
9	chr15:57968200-57983600	Weak transcription	Gastric	stomach
10	chr15:57968400-57975000	Weak transcription	Fetal Intestine Large	intestine
11	chr15:57970600-57975200	Weak transcription	Fetal Intestine Small	intestine
12	chr15:57971600-57973400	Enhancers	Fetal Heart	heart
13	chr15:57971800-57973600	Enhancers	HSMMtube	muscle
14	chr15:57972200-57974000	Weak transcription	Adipose Nuclei	Adipose
15	chr15:57972200-57974800	Weak transcription	Right Ventricle	heart
16	chr15:57972400-57975000	Weak transcription	Right Atrium	heart
17	chr15:57972600-57973400	Weak transcription	Left Ventricle	heart
18	chr15:57972800-57976800	Weak transcription	Aorta	Aorta
19	chr15:57972800-57977600	Weak transcription	Osteobl	bone
20	chr15:57972800-57978000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr15:57973000-57977200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr15:57973000-57977400	Weak transcription	NHDF-Ad	bronchial
23	chr15:57973000-57978000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr15:57973000-57984600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:57973200-57977200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr15:57973200-57977600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:57973200-57978000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr15:57973200-57978000	Weak transcription	Stomach Mucosa	stomach

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