Variant report

Variant	rs7173197
Chromosome Location	chr15:57897401-57897402
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11071340	1.00[CEU][hapmap]
rs11071342	1.00[CEU][hapmap]
rs12440250	1.00[CEU][hapmap]
rs1346120	1.00[CEU][hapmap]
rs1593439	1.00[CEU][hapmap]
rs1666582	1.00[EUR][1000 genomes]
rs1690330	1.00[EUR][1000 genomes]
rs1690332	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2081515	1.00[CEU][hapmap]
rs2414516	1.00[CEU][hapmap]
rs2442072	1.00[EUR][1000 genomes]
rs2442077	1.00[EUR][1000 genomes]
rs2451181	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2451188	1.00[EUR][1000 genomes]
rs2451189	1.00[EUR][1000 genomes]
rs2453095	1.00[EUR][1000 genomes]
rs2453096	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2453097	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2453098	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2635379	1.00[EUR][1000 genomes]
rs2641572	1.00[EUR][1000 genomes]
rs2641573	1.00[EUR][1000 genomes]
rs2899603	1.00[CEU][hapmap]
rs2934430	1.00[EUR][1000 genomes]
rs2934432	1.00[EUR][1000 genomes]
rs2934433	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4564513	1.00[CEU][hapmap]
rs4774279	1.00[CEU][hapmap]
rs4774280	1.00[CEU][hapmap]
rs57014962	1.00[EUR][1000 genomes]
rs6493941	1.00[CEU][hapmap]
rs6493942	1.00[CEU][hapmap]
rs724785	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8023855	1.00[CEU][hapmap]
rs8024008	1.00[CEU][hapmap]
rs8024736	1.00[EUR][1000 genomes]
rs8025907	0.86[EUR][1000 genomes]
rs935547	1.00[EUR][1000 genomes]
rs9921015	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv904255	chr15:57790436-57907574	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57885200-57899000	Weak transcription	Hela-S3	cervix
2	chr15:57885200-57899400	Weak transcription	HUVEC	blood vessel
3	chr15:57885200-57899800	Weak transcription	Placenta	Placenta
4	chr15:57887800-57899200	Weak transcription	Colonic Mucosa	Colon
5	chr15:57887800-57899200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr15:57890000-57899000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:57890000-57899400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr15:57890000-57902400	Weak transcription	Ovary	ovary
9	chr15:57890200-57904200	Weak transcription	Fetal Stomach	stomach
10	chr15:57890200-57904400	Weak transcription	Fetal Lung	lung
11	chr15:57891800-57901200	Weak transcription	Colon Smooth Muscle	Colon
12	chr15:57892000-57899200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr15:57892000-57908800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:57892600-57903200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr15:57894000-57899200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr15:57894000-57899200	Weak transcription	Spleen	Spleen
17	chr15:57894400-57938200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr15:57895600-57898000	Enhancers	Pancreas	Pancrea
19	chr15:57895800-57899200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:57896000-57897800	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr15:57896200-57898400	Strong transcription	Fetal Intestine Large	intestine
22	chr15:57896400-57898200	Strong transcription	Fetal Intestine Small	intestine
23	chr15:57896400-57898400	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr15:57896400-57899200	Genic enhancers	Fetal Heart	heart
25	chr15:57896800-57899000	Weak transcription	Right Atrium	heart
26	chr15:57897000-57898000	Strong transcription	Stomach Smooth Muscle	stomach
27	chr15:57897000-57898200	Genic enhancers	Left Ventricle	heart
28	chr15:57897000-57899000	Weak transcription	Right Ventricle	heart
29	chr15:57897000-57899000	Weak transcription	HMEC	breast
30	chr15:57897000-57899200	Weak transcription	Esophagus	oesophagus
31	chr15:57897000-57899200	Weak transcription	Stomach Mucosa	stomach
32	chr15:57897000-57899400	Weak transcription	Gastric	stomach
33	chr15:57897000-57909200	Weak transcription	Psoas Muscle	Psoas
34	chr15:57897200-57899200	Weak transcription	Fetal Muscle Leg	muscle
35	chr15:57897200-57899200	Weak transcription	Lung	lung
36	chr15:57897200-57899200	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr15:57897200-57903600	Weak transcription	Aorta	Aorta
38	chr15:57897200-57903800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr15:57897400-57898200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr15:57897400-57899000	Strong transcription	Adipose Nuclei	Adipose

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