Variant report

Variant	rs2635379
Chromosome Location	chr15:57898893-57898894
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57897591..57899946-chr15:57902419..57904652,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1666582	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1690330	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1690332	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2442072	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2442077	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2451181	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2451188	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2451189	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2453095	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2453096	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2453097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2453098	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2641572	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2641573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2934430	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2934432	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2934433	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57014962	1.00[EUR][1000 genomes]
rs7173197	1.00[EUR][1000 genomes]
rs724785	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8024736	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8025907	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs935547	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv904255	chr15:57790436-57907574	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57885200-57899000	Weak transcription	Hela-S3	cervix
2	chr15:57885200-57899400	Weak transcription	HUVEC	blood vessel
3	chr15:57885200-57899800	Weak transcription	Placenta	Placenta
4	chr15:57887800-57899200	Weak transcription	Colonic Mucosa	Colon
5	chr15:57887800-57899200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr15:57890000-57899000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:57890000-57899400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr15:57890000-57902400	Weak transcription	Ovary	ovary
9	chr15:57890200-57904200	Weak transcription	Fetal Stomach	stomach
10	chr15:57890200-57904400	Weak transcription	Fetal Lung	lung
11	chr15:57891800-57901200	Weak transcription	Colon Smooth Muscle	Colon
12	chr15:57892000-57899200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr15:57892000-57908800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:57892600-57903200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr15:57894000-57899200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr15:57894000-57899200	Weak transcription	Spleen	Spleen
17	chr15:57894400-57938200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr15:57895800-57899200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr15:57896400-57899200	Genic enhancers	Fetal Heart	heart
20	chr15:57896800-57899000	Weak transcription	Right Atrium	heart
21	chr15:57897000-57899000	Weak transcription	Right Ventricle	heart
22	chr15:57897000-57899000	Weak transcription	HMEC	breast
23	chr15:57897000-57899200	Weak transcription	Esophagus	oesophagus
24	chr15:57897000-57899200	Weak transcription	Stomach Mucosa	stomach
25	chr15:57897000-57899400	Weak transcription	Gastric	stomach
26	chr15:57897000-57909200	Weak transcription	Psoas Muscle	Psoas
27	chr15:57897200-57899200	Weak transcription	Fetal Muscle Leg	muscle
28	chr15:57897200-57899200	Weak transcription	Lung	lung
29	chr15:57897200-57899200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr15:57897200-57903600	Weak transcription	Aorta	Aorta
31	chr15:57897200-57903800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr15:57897400-57899000	Strong transcription	Adipose Nuclei	Adipose
33	chr15:57897800-57899000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr15:57898000-57899000	Weak transcription	Pancreas	Pancrea
35	chr15:57898000-57899000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr15:57898200-57899000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr15:57898200-57899000	Weak transcription	Fetal Intestine Small	intestine
38	chr15:57898200-57899200	Weak transcription	Left Ventricle	heart
39	chr15:57898400-57899000	Weak transcription	Fetal Intestine Large	intestine
40	chr15:57898400-57899000	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr15:57898400-57900200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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