Variant report

Variant	rs57014962
Chromosome Location	chr15:57872723-57872724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1666582	1.00[EUR][1000 genomes]
rs1690330	1.00[EUR][1000 genomes]
rs1690332	1.00[EUR][1000 genomes]
rs2442072	1.00[EUR][1000 genomes]
rs2442077	1.00[EUR][1000 genomes]
rs2451181	1.00[EUR][1000 genomes]
rs2451188	1.00[EUR][1000 genomes]
rs2451189	1.00[EUR][1000 genomes]
rs2453095	1.00[EUR][1000 genomes]
rs2453096	1.00[EUR][1000 genomes]
rs2453097	1.00[EUR][1000 genomes]
rs2453098	1.00[EUR][1000 genomes]
rs2635379	1.00[EUR][1000 genomes]
rs2641572	1.00[EUR][1000 genomes]
rs2641573	1.00[EUR][1000 genomes]
rs2934430	1.00[EUR][1000 genomes]
rs2934432	1.00[EUR][1000 genomes]
rs2934433	1.00[EUR][1000 genomes]
rs7173197	1.00[EUR][1000 genomes]
rs724785	1.00[EUR][1000 genomes]
rs8024736	1.00[EUR][1000 genomes]
rs8025907	0.86[EUR][1000 genomes]
rs935547	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv904255	chr15:57790436-57907574	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57868000-57873800	Weak transcription	Fetal Lung	lung
2	chr15:57869800-57875000	Enhancers	Fetal Intestine Small	intestine
3	chr15:57869800-57875000	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr15:57869800-57875200	Enhancers	Fetal Intestine Large	intestine
5	chr15:57870200-57873800	Enhancers	Duodenum Mucosa	Duodenum
6	chr15:57870800-57874800	Enhancers	Small Intestine	intestine
7	chr15:57871600-57874400	Enhancers	Gastric	stomach
8	chr15:57872200-57874600	Enhancers	Stomach Mucosa	stomach
9	chr15:57872400-57875000	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr15:57872600-57873000	Enhancers	Lung	lung
11	chr15:57872600-57873000	Enhancers	HepG2	liver
12	chr15:57872600-57873400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr15:57872600-57874600	Enhancers	Pancreas	Pancrea
14	chr15:57872600-57875000	Enhancers	Colonic Mucosa	Colon
15	chr15:57872600-57875000	Enhancers	Rectal Mucosa Donor 29	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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