Variant report

Variant	rs2442072
Chromosome Location	chr15:57901814-57901815
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:57892782..57895181-chr15:57899223..57902002,2	MCF-7	breast:
2	chr15:57883895..57885993-chr15:57900573..57902281,2	MCF-7	breast:
3	chr15:57890403..57892737-chr15:57900809..57902698,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000263155	Chromatin interaction
ENSG00000137878	Chromatin interaction
ENSG00000255529	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1666582	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1690330	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1690332	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2442077	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2451181	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2451188	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2451189	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2453095	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2453096	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2453097	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2453098	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2635379	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2641572	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2641573	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2934430	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2934432	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2934433	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57014962	1.00[EUR][1000 genomes]
rs7173197	1.00[EUR][1000 genomes]
rs724785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8024736	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8025907	0.86[EUR][1000 genomes]
rs935547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv904255	chr15:57790436-57907574	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57890000-57902400	Weak transcription	Ovary	ovary
2	chr15:57890200-57904200	Weak transcription	Fetal Stomach	stomach
3	chr15:57890200-57904400	Weak transcription	Fetal Lung	lung
4	chr15:57892000-57908800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:57892600-57903200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr15:57894400-57938200	Weak transcription	Primary B cells from peripheral blood	blood
7	chr15:57897000-57909200	Weak transcription	Psoas Muscle	Psoas
8	chr15:57897200-57903600	Weak transcription	Aorta	Aorta
9	chr15:57897200-57903800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr15:57899000-57902600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr15:57899000-57905000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr15:57899200-57905000	Enhancers	Duodenum Mucosa	Duodenum
13	chr15:57899200-57905200	Enhancers	Fetal Heart	heart
14	chr15:57899400-57903400	Enhancers	HUVEC	blood vessel
15	chr15:57899400-57904000	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr15:57899600-57904000	Weak transcription	Fetal Muscle Leg	muscle
17	chr15:57899800-57903600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr15:57900000-57902000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr15:57900000-57904200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:57900000-57904200	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr15:57900200-57902000	Weak transcription	NH-A	brain
22	chr15:57900200-57902000	Weak transcription	Osteobl	bone
23	chr15:57900200-57902600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr15:57900200-57902600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr15:57900200-57904200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr15:57900200-57904800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:57900400-57902000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr15:57900400-57902200	Weak transcription	NHEK	skin
29	chr15:57900400-57903600	Weak transcription	HMEC	breast
30	chr15:57900400-57904400	Enhancers	Stomach Mucosa	stomach
31	chr15:57900600-57902200	Enhancers	Hela-S3	cervix
32	chr15:57900600-57902600	Weak transcription	Gastric	stomach
33	chr15:57900600-57904000	Weak transcription	Placenta	Placenta
34	chr15:57900600-57905200	Enhancers	Fetal Intestine Large	intestine
35	chr15:57900600-57911800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr15:57900600-57941600	Weak transcription	Colonic Mucosa	Colon
37	chr15:57900800-57902000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr15:57900800-57904000	Weak transcription	Lung	lung
39	chr15:57901200-57902600	Weak transcription	Esophagus	oesophagus
40	chr15:57901200-57902600	Weak transcription	Right Atrium	heart
41	chr15:57901200-57902800	Weak transcription	Left Ventricle	heart
42	chr15:57901200-57903600	Weak transcription	Right Ventricle	heart
43	chr15:57901200-57905000	Enhancers	Colon Smooth Muscle	Colon
44	chr15:57901400-57902600	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr15:57901600-57902200	Enhancers	A549	lung
46	chr15:57901600-57902600	Enhancers	Rectal Smooth Muscle	rectum
47	chr15:57901600-57905000	Enhancers	Fetal Intestine Small	intestine
48	chr15:57901800-57902000	Weak transcription	Adipose Nuclei	Adipose
49	chr15:57901800-57902200	Enhancers	Stomach Smooth Muscle	stomach
50	chr15:57901800-57902600	Weak transcription	Pancreas	Pancrea

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