Variant report

Variant	rs4774638
Chromosome Location	chr15:53175519-53175520
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10851524	0.96[CEU][hapmap];0.90[GIH][hapmap];0.98[TSI][hapmap];0.96[EUR][1000 genomes]
rs12594598	0.80[AMR][1000 genomes]
rs12898721	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12911971	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1899733	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1899735	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1899736	0.95[EUR][1000 genomes]
rs1899738	0.95[EUR][1000 genomes]
rs1899741	0.92[EUR][1000 genomes]
rs1899742	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2414186	0.93[EUR][1000 genomes]
rs4776079	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs67231090	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7166575	0.93[EUR][1000 genomes]
rs8027796	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1043999	chr15:53162917-53187508	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53165800-53183200	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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