Variant report
| Variant | rs8027796 |
|---|---|
| Chromosome Location | chr15:53185670-53185671 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:53184740..53186882-chr15:53187032..53188807,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10851524 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12898721 | 0.86[EUR][1000 genomes] |
| rs12900070 | 0.88[ASN][1000 genomes] |
| rs12911971 | 0.91[EUR][1000 genomes] |
| rs16965333 | 0.81[YRI][hapmap] |
| rs1899733 | 1.00[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs1899735 | 1.00[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs1899736 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1899738 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1899741 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1899742 | 0.94[EUR][1000 genomes] |
| rs2414186 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4774638 | 1.00[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs4776079 | 1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs67231090 | 0.86[EUR][1000 genomes] |
| rs7166575 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8032241 | 0.85[ASN][1000 genomes] |
| rs8032248 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv471245 | chr15:52607262-53187165 | Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 52 gene(s) | inside rSNPs | diseases |
| 2 | nsv1043999 | chr15:53162917-53187508 | Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:53185600-53186000 | Enhancers | Pancreas | Pancrea |
