Variant report

Variant	rs4774738
Chromosome Location	chr15:55402807-55402808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10518797	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10518803	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1528467	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16975900	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16975905	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17238150	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17818982	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17818988	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1919175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1994891	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1994892	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1997289	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2103303	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2899577	0.91[ASN][1000 genomes]
rs4586369	1.00[ASN][1000 genomes]
rs4774203	1.00[ASN][1000 genomes]
rs483320	0.94[EUR][1000 genomes]
rs516356	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs551132	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6493747	0.91[ASN][1000 genomes]
rs73404075	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73404081	0.88[ASN][1000 genomes]
rs73404091	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73421740	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043176	chr15:55010228-55563000	Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1042741	chr15:55068022-55622497	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1039471	chr15:55137606-55552555	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv917323	chr15:55290499-56041334	Genic enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
5	nsv457156	chr15:55400649-55466155	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv569521	chr15:55400649-55466155	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1043789	chr15:55400872-56092454	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55401000-55406200	Weak transcription	Fetal Muscle Leg	muscle
2	chr15:55402600-55403000	Enhancers	H9 Cell Line	embryonic stem cell

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