Variant report

Variant	rs73404075
Chromosome Location	chr15:55411101-55411102
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10518797	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10518803	0.93[EUR][1000 genomes]
rs1528467	0.88[EUR][1000 genomes]
rs16975900	0.88[EUR][1000 genomes]
rs16975905	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17238150	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17818982	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17818988	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1919175	0.88[EUR][1000 genomes]
rs1994891	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1994892	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1997289	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2103303	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2899577	1.00[ASN][1000 genomes]
rs4586369	0.91[ASN][1000 genomes]
rs4774203	0.91[ASN][1000 genomes]
rs4774738	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs483320	0.88[EUR][1000 genomes]
rs516356	0.88[EUR][1000 genomes]
rs551132	0.88[EUR][1000 genomes]
rs57564551	1.00[AFR][1000 genomes]
rs6493747	1.00[ASN][1000 genomes]
rs7174791	0.83[ASN][1000 genomes]
rs73404048	0.85[AFR][1000 genomes]
rs73404051	0.92[AFR][1000 genomes]
rs73404081	0.96[ASN][1000 genomes]
rs73404091	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73405893	0.87[ASN][1000 genomes]
rs73407805	0.83[ASN][1000 genomes]
rs73421740	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043176	chr15:55010228-55563000	Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1042741	chr15:55068022-55622497	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1039471	chr15:55137606-55552555	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv917323	chr15:55290499-56041334	Genic enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
5	nsv457156	chr15:55400649-55466155	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv569521	chr15:55400649-55466155	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1043789	chr15:55400872-56092454	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55405200-55416800	Weak transcription	Fetal Lung	lung
2	chr15:55410600-55411200	Enhancers	Fetal Kidney	kidney
3	chr15:55410600-55411400	Enhancers	Psoas Muscle	Psoas

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