Variant report

Variant	rs4774879
Chromosome Location	chr15:56905484-56905485
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1031985	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10518858	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11071278	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11071282	0.93[CEU][hapmap];0.86[TSI][hapmap]
rs11071283	0.93[CEU][hapmap];0.86[TSI][hapmap]
rs11634704	0.82[EUR][1000 genomes]
rs12148474	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12148781	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12441674	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12898886	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1482066	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1600830	0.91[ASN][1000 genomes]
rs2128172	0.93[CEU][hapmap]
rs2128174	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2128175	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2128176	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2128177	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2733230	0.98[EUR][1000 genomes]
rs28374324	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28379958	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28409651	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28678122	0.93[CEU][hapmap];0.86[TSI][hapmap]
rs28782544	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28805712	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28813195	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28842489	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3199	0.81[MEX][hapmap]
rs4238320	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4456442	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4774870	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4774876	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4774877	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56327619	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7165804	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8026706	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8031549	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8032893	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8034366	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9806469	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1041239	chr15:56888945-56959028	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56901800-56905800	Weak transcription	Thymus	Thymus
2	chr15:56902800-56945400	Weak transcription	Right Ventricle	heart
3	chr15:56903800-56907800	Enhancers	Fetal Thymus	thymus
4	chr15:56904600-56905800	Enhancers	Dnd41	blood

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