Variant report

Variant	rs4775006
Chromosome Location	chr15:58215727-58215728
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10518961	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs1061278	0.85[CEU][hapmap];0.84[CHB][hapmap];0.81[AMR][1000 genomes]
rs1063666	0.81[CEU][hapmap];0.84[CHB][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10851632	0.82[CEU][hapmap];0.82[CHB][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11071364	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs11071367	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs12148281	0.85[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap]
rs12594082	0.85[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs12595180	0.85[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs12898976	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs12903724	0.85[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs12907125	0.82[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs12909423	0.85[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs12909979	0.82[AMR][1000 genomes]
rs12912093	0.85[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs12914388	0.82[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs12914603	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs12917536	0.85[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs1372369	0.85[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs1441815	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs1441819	0.85[CEU][hapmap];0.85[CHB][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1441829	0.85[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs17820966	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs17820990	0.82[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs1822205	0.85[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs1899355	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs1994926	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs1994927	0.82[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs2067062	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs2197092	0.81[CEU][hapmap];0.84[CHB][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2414527	0.85[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes]
rs2414530	0.85[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs2642630	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs2642632	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs2704225	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs2899611	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs2899613	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs3204690	0.81[CEU][hapmap];0.84[CHB][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3742959	0.85[CEU][hapmap];0.84[CHB][hapmap];0.85[AMR][1000 genomes]
rs3742960	0.85[CHB][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3742961	0.84[CHB][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3784257	0.85[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap]
rs3784259	0.85[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap]
rs3784264	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs4144005	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs4238327	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs4646554	0.84[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs4646555	0.85[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs4646557	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs4646559	0.87[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs4646560	0.89[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs4646564	0.85[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs4646579	0.86[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs4646580	0.88[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs4646581	0.86[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs4646582	0.82[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs4646584	0.86[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs4646588	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs4646589	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs4646590	0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs4646594	0.88[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap]
rs4646595	0.88[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap]
rs4646600	0.85[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs4646605	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs4646606	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs4646607	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs4646609	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs4646623	0.80[AMR][1000 genomes]
rs4646625	0.85[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes]
rs4646626	0.85[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes]
rs4646635	0.82[AMR][1000 genomes]
rs4646642	0.80[CEU][hapmap];0.84[CHB][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4646645	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6493977	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs6493979	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs6493981	0.86[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs7171261	0.85[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs7178598	0.88[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs7180059	0.86[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs8026952	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs8027188	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs8032572	0.85[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs8041644	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs920636	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833023	chr15:58161839-58340174	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv569593	chr15:58201698-58308650	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58211800-58217200	Enhancers	Muscle Satellite Cultured Cells	--
2	chr15:58212200-58216400	Enhancers	Left Ventricle	heart
3	chr15:58212400-58217400	Enhancers	Fetal Muscle Leg	muscle
4	chr15:58212600-58217000	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr15:58212800-58216000	Weak transcription	Esophagus	oesophagus
6	chr15:58213200-58216600	Enhancers	Ovary	ovary
7	chr15:58213200-58217200	Enhancers	Adipose Nuclei	Adipose
8	chr15:58213600-58216200	Enhancers	Small Intestine	intestine
9	chr15:58214000-58217600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:58214200-58216200	Enhancers	Psoas Muscle	Psoas
11	chr15:58214200-58216800	Enhancers	Liver	Liver
12	chr15:58214400-58216000	Enhancers	Fetal Heart	heart
13	chr15:58214400-58216200	Enhancers	Fetal Stomach	stomach
14	chr15:58214400-58216800	Enhancers	Pancreas	Pancrea
15	chr15:58214600-58216000	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr15:58214600-58216400	Enhancers	Fetal Kidney	kidney
17	chr15:58214600-58216400	Enhancers	Fetal Lung	lung
18	chr15:58214600-58217600	Enhancers	Colonic Mucosa	Colon
19	chr15:58214800-58215800	Weak transcription	Spleen	Spleen
20	chr15:58214800-58216800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr15:58214800-58217400	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr15:58215000-58216000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr15:58215000-58216200	Enhancers	Aorta	Aorta
24	chr15:58215000-58217000	Enhancers	HSMMtube	muscle
25	chr15:58215200-58216200	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr15:58215200-58216400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr15:58215400-58215800	Weak transcription	Right Ventricle	heart
28	chr15:58215400-58216200	Flanking Active TSS	HUVEC	blood vessel
29	chr15:58215600-58215800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
30	chr15:58215600-58216000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr15:58215600-58216200	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr15:58215600-58216200	Enhancers	Stomach Mucosa	stomach
33	chr15:58215600-58217200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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