Variant report

Variant	rs920636
Chromosome Location	chr15:58210855-58210856
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58205864..58207434-chr15:58208455..58211266,2	MCF-7	breast:

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10518961	0.81[JPT][hapmap]
rs1061278	0.84[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap]
rs1063666	0.84[CHB][hapmap];0.87[CHD][hapmap];0.90[JPT][hapmap]
rs10851632	0.81[CHB][hapmap]
rs11071367	0.81[JPT][hapmap]
rs12148281	0.85[JPT][hapmap]
rs12440501	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12594082	0.81[JPT][hapmap]
rs12898976	0.81[JPT][hapmap]
rs12903724	0.81[JPT][hapmap]
rs12907125	0.81[JPT][hapmap]
rs12909423	0.85[CHD][hapmap];0.81[JPT][hapmap]
rs12912093	0.81[JPT][hapmap]
rs12914388	0.81[JPT][hapmap]
rs12914603	0.81[JPT][hapmap]
rs12917536	0.81[JPT][hapmap]
rs1348197	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1372369	0.81[JPT][hapmap]
rs1441815	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs1441819	0.84[CHB][hapmap]
rs1441822	0.82[AMR][1000 genomes]
rs1441829	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs17820966	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs17820990	0.81[JPT][hapmap]
rs1816777	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1816778	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1822205	0.85[CHD][hapmap];0.81[JPT][hapmap]
rs1899355	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs1994926	0.81[JPT][hapmap]
rs1994927	0.81[JPT][hapmap]
rs2067062	0.81[JPT][hapmap]
rs2197092	0.84[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap]
rs2218260	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2414527	0.84[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap]
rs2414530	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs2642630	0.81[JPT][hapmap]
rs2642632	0.81[JPT][hapmap]
rs2704225	0.81[JPT][hapmap]
rs2899611	0.81[JPT][hapmap]
rs2899613	0.81[JPT][hapmap]
rs3204690	0.84[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap]
rs3742959	0.84[CHB][hapmap];0.87[CHD][hapmap];0.90[JPT][hapmap]
rs3742960	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs3742961	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs3784257	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs3784259	0.84[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap]
rs3784264	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs4090	0.83[AMR][1000 genomes]
rs4144005	0.81[JPT][hapmap]
rs4238327	0.81[JPT][hapmap]
rs4646554	0.81[JPT][hapmap]
rs4646555	0.81[JPT][hapmap]
rs4646559	0.80[JPT][hapmap]
rs4646560	0.81[JPT][hapmap]
rs4646564	0.81[JPT][hapmap]
rs4646580	0.81[JPT][hapmap]
rs4646581	0.81[JPT][hapmap]
rs4646582	0.81[JPT][hapmap]
rs4646584	0.81[JPT][hapmap]
rs4646588	0.81[JPT][hapmap]
rs4646589	0.81[JPT][hapmap]
rs4646590	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs4646594	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs4646595	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs4646600	0.81[JPT][hapmap]
rs4646605	0.81[JPT][hapmap]
rs4646606	0.81[JPT][hapmap]
rs4646607	0.85[CHD][hapmap];0.81[JPT][hapmap]
rs4646609	0.81[JPT][hapmap]
rs4646625	0.84[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap]
rs4646626	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs4646642	0.83[CHB][hapmap];0.87[CHD][hapmap];0.90[JPT][hapmap]
rs4775006	0.89[ASN][1000 genomes]
rs6493977	0.81[JPT][hapmap]
rs6493979	0.81[JPT][hapmap]
rs6493981	0.81[JPT][hapmap]
rs7171261	0.81[JPT][hapmap]
rs7173078	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7178598	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs7180059	0.81[JPT][hapmap]
rs7498008	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8024164	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8026952	0.81[JPT][hapmap]
rs8027188	0.81[JPT][hapmap]
rs8032572	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs8041644	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs8042779	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833023	chr15:58161839-58340174	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv569593	chr15:58201698-58308650	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58207200-58214600	Weak transcription	Fetal Kidney	kidney
2	chr15:58207400-58214600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr15:58207600-58211800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr15:58207600-58215000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:58208400-58211000	Enhancers	Pancreas	Pancrea
6	chr15:58208600-58212000	Weak transcription	Spleen	Spleen
7	chr15:58208800-58213200	Weak transcription	Right Ventricle	heart
8	chr15:58209200-58214800	Weak transcription	Lung	lung
9	chr15:58209200-58215000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr15:58209400-58212200	Weak transcription	Left Ventricle	heart
11	chr15:58209400-58213200	Weak transcription	HSMMtube	muscle
12	chr15:58209400-58213800	Weak transcription	Right Atrium	heart
13	chr15:58209400-58214600	Weak transcription	Fetal Lung	lung
14	chr15:58210200-58212400	Weak transcription	Fetal Heart	heart
15	chr15:58210200-58213200	Weak transcription	Ovary	ovary
16	chr15:58210400-58211200	Enhancers	Liver	Liver

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