Variant report

Variant	rs7173078
Chromosome Location	chr15:58203953-58203954
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12440501	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1348197	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1441822	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1816777	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1816778	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2218260	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4090	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7498008	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8024164	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8042677	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8042779	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs920636	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833023	chr15:58161839-58340174	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv569593	chr15:58201698-58308650	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58203400-58204000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr15:58203400-58210200	Enhancers	Ovary	ovary
3	chr15:58203800-58204000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr15:58203800-58204000	Enhancers	Fetal Kidney	kidney
5	chr15:58203800-58204000	Enhancers	Left Ventricle	heart
6	chr15:58203800-58204000	Enhancers	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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