Variant report

Variant	rs4776610
Chromosome Location	chr15:73004093-73004094
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73002571..73004510-chr15:73005846..73007759,2	MCF-7	breast:
2	chr15:73001684..73004705-chr15:73006633..73010737,4	K562	blood:

Variant related genes	Relation type
ENSG00000140463	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11072381	0.87[AMR][1000 genomes]
rs11072382	0.87[AMR][1000 genomes]
rs12902880	0.87[AMR][1000 genomes]
rs12903320	0.87[AMR][1000 genomes]
rs12908961	0.86[AFR][1000 genomes]
rs12914333	0.87[AMR][1000 genomes]
rs1991288	0.87[AMR][1000 genomes]
rs3850990	0.82[AFR][1000 genomes]
rs3862416	0.85[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4238454	0.87[AMR][1000 genomes]
rs4274404	0.87[AMR][1000 genomes]
rs4777527	0.85[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6495014	0.85[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7182527	0.87[AMR][1000 genomes]
rs7182789	0.87[AMR][1000 genomes]
rs8033604	0.85[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8038907	0.87[AMR][1000 genomes]
rs8039792	0.87[AMR][1000 genomes]
rs893454	0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9806635	0.87[AMR][1000 genomes]
rs9806649	0.87[AMR][1000 genomes]
rs9806685	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	esv3430383	chr15:72821093-73035167	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72979200-73023600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:72979200-73023600	Weak transcription	Lung	lung
3	chr15:72979400-73004400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr15:72979400-73006000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr15:72979400-73027200	Weak transcription	Aorta	Aorta
6	chr15:72979600-73004200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr15:72979600-73004600	Weak transcription	Primary B cells from cord blood	blood
8	chr15:72979600-73004600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr15:72979600-73023200	Weak transcription	Fetal Kidney	kidney
10	chr15:72979600-73026800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:72979800-73004400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr15:72979800-73007200	Weak transcription	Left Ventricle	heart
13	chr15:72979800-73027400	Weak transcription	Hela-S3	cervix
14	chr15:72980200-73004200	Weak transcription	Liver	Liver
15	chr15:72980200-73008000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr15:72981000-73018600	Weak transcription	Pancreas	Pancrea
17	chr15:72985200-73021000	Weak transcription	Fetal Intestine Small	intestine
18	chr15:72990400-73004400	Weak transcription	Primary T cells from cord blood	blood
19	chr15:72992800-73004400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:72993000-73028800	Weak transcription	NHEK	skin
21	chr15:72996600-73005000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr15:72999000-73004600	Weak transcription	HSMM	muscle
23	chr15:72999000-73009600	Weak transcription	HSMMtube	muscle
24	chr15:72999000-73020400	Weak transcription	NH-A	brain
25	chr15:72999000-73021800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr15:72999000-73044000	Weak transcription	Small Intestine	intestine
27	chr15:72999200-73004400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr15:72999600-73027600	Weak transcription	NHLF	lung
29	chr15:72999800-73007600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr15:73000200-73006800	Weak transcription	Osteobl	bone
31	chr15:73000400-73004400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr15:73000400-73004400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr15:73000600-73004400	Weak transcription	Brain Substantia Nigra	brain
34	chr15:73000600-73005600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr15:73000800-73004200	Weak transcription	Brain Anterior Caudate	brain
36	chr15:73000800-73004400	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr15:73000800-73004400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr15:73000800-73004400	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr15:73000800-73007600	Weak transcription	Brain Cingulate Gyrus	brain
40	chr15:73001000-73004400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr15:73001200-73007400	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr15:73001200-73027600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr15:73001400-73004400	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr15:73001400-73004400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr15:73001400-73020400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr15:73001400-73027400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr15:73001400-73027400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr15:73001400-73027600	Weak transcription	Right Ventricle	heart
49	chr15:73001600-73007600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr15:73001600-73008600	Weak transcription	Placenta	Placenta

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