Variant report

Variant	rs8039792
Chromosome Location	chr15:72973408-72973409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72971779..72975423-chr15:72976170..72980827,7	K562	blood:
2	chr15:72972081..72974113-chr15:72978264..72980003,3	MCF-7	breast:
3	chr15:72973101..72975344-chr15:72976692..72980792,4	MCF-7	breast:
4	chr15:72972671..72974749-chr15:72976443..72978214,2	K562	blood:

Variant related genes	Relation type
ENSG00000175202	Chromatin interaction
ENSG00000140463	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11072381	0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11072382	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11634630	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs12324395	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs12902880	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12903320	0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12914333	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1991288	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3862416	0.87[AMR][1000 genomes]
rs4238454	0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4274404	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4776610	0.87[AMR][1000 genomes]
rs4777527	0.87[AMR][1000 genomes]
rs6495014	0.87[AMR][1000 genomes]
rs7182527	0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7182789	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs8033604	0.87[AMR][1000 genomes]
rs8038907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs893454	0.87[AMR][1000 genomes]
rs9806635	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9806649	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9806685	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	esv3430383	chr15:72821093-73035167	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72963800-72977600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:72973000-72973600	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr15:72973200-72977400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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