Variant report

Variant	rs4778040
Chromosome Location	chr15:92742633-92742634
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1479521	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3956218	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4304975	0.86[ASN][1000 genomes]
rs4304976	0.86[ASN][1000 genomes]
rs59933941	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60775541	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62009277	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62011490	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62011492	0.97[ASN][1000 genomes]
rs720680	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8028773	0.92[EUR][1000 genomes]
rs9920312	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92741200-92744200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:92741400-92748200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:92741400-92748200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:92741400-92748400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr15:92741400-92748600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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