Variant report

Variant	rs720680
Chromosome Location	chr15:92773669-92773670
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10162665	0.85[ASN][1000 genomes]
rs11074058	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs1479521	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3956218	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4304975	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4304976	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4777930	0.82[ASN][1000 genomes]
rs4778040	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59933941	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60775541	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62009277	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62011490	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62011492	0.94[ASN][1000 genomes]
rs8028773	0.82[EUR][1000 genomes]
rs9920312	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs720680	RGMA	cis	parietal	SCAN
rs720680	MESP1	cis	cerebellum	SCAN
rs720680	NCRNA00052	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92772200-92773800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:92773600-92774400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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