Variant report

Variant	rs4778857
Chromosome Location	chr15:79348462-79348463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12440502	1.00[LWK][hapmap]
rs747109	0.93[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs998031	0.93[CEU][hapmap];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525630	chr15:79344324-79359310	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv457210	chr15:79344416-79394577	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv570204	chr15:79344416-79394577	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79342200-79349400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:79344800-79356600	Weak transcription	Brain Anterior Caudate	brain
3	chr15:79345000-79348600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr15:79345200-79350200	Weak transcription	Right Atrium	heart
5	chr15:79346400-79349800	Strong transcription	Pancreatic Islets	Pancreatic Islet
6	chr15:79346600-79349800	Strong transcription	Brain Angular Gyrus	brain
7	chr15:79346600-79355600	Weak transcription	Brain Hippocampus Middle	brain
8	chr15:79347200-79351800	Weak transcription	Brain Substantia Nigra	brain
9	chr15:79348200-79350400	Strong transcription	Brain Cingulate Gyrus	brain
10	chr15:79348200-79350800	Strong transcription	Brain Inferior Temporal Lobe	brain
11	chr15:79348400-79349200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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