Variant report

Variant	rs747109
Chromosome Location	chr15:79351065-79351066
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4778857	0.93[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs998031	1.00[CEU][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525630	chr15:79344324-79359310	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv457210	chr15:79344416-79394577	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv570204	chr15:79344416-79394577	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79344800-79356600	Weak transcription	Brain Anterior Caudate	brain
2	chr15:79346600-79355600	Weak transcription	Brain Hippocampus Middle	brain
3	chr15:79347200-79351800	Weak transcription	Brain Substantia Nigra	brain
4	chr15:79349800-79356600	Weak transcription	Brain Angular Gyrus	brain
5	chr15:79349800-79361000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr15:79350400-79351800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:79350400-79353200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr15:79350800-79355400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr15:79350800-79356600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links