Variant report

Variant	rs4785406
Chromosome Location	chr16:48144689-48144690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11861448	1.00[MEX][hapmap]
rs13331266	1.00[MEX][hapmap]
rs13334423	1.00[MEX][hapmap]
rs16945824	1.00[MEX][hapmap]
rs16945835	1.00[MEX][hapmap]
rs4785404	1.00[CEU][hapmap]
rs6500304	1.00[MEX][hapmap]
rs8057474	1.00[CEU][hapmap]
rs939362	1.00[MEX][hapmap]
rs961668	1.00[MEX][hapmap]
rs9925287	1.00[MEX][hapmap]
rs9940987	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1059259	chr16:48113396-48304404	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv542916	chr16:48113396-48304404	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48139200-48151000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:48142800-48144800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr16:48144200-48147200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr16:48144600-48146800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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