Variant report

Variant	rs8057474
Chromosome Location	chr16:48138272-48138273
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2216362	1.00[EUR][1000 genomes]
rs2216363	1.00[EUR][1000 genomes]
rs4785404	1.00[CEU][hapmap]
rs4785406	1.00[CEU][hapmap]
rs59953801	1.00[EUR][1000 genomes]
rs74016220	1.00[EUR][1000 genomes]
rs74016273	1.00[EUR][1000 genomes]
rs9928988	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1059259	chr16:48113396-48304404	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv542916	chr16:48113396-48304404	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48131800-48138600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:48135200-48139000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr16:48135800-48140000	Weak transcription	Fetal Brain Male	brain
4	chr16:48136200-48141600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr16:48136400-48139800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr16:48137600-48139800	Enhancers	Pancreas	Pancrea
7	chr16:48137800-48140000	Weak transcription	GM12878-XiMat	blood
8	chr16:48138000-48139800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr16:48138000-48143000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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