Variant report

Variant	rs4785551
Chromosome Location	chr16:47997738-47997739
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:47986689..47989037-chr16:47994886..47998833,3	MCF-7	breast:

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10492847	1.00[ASN][1000 genomes]
rs11076576	1.00[ASN][1000 genomes]
rs12102746	1.00[ASN][1000 genomes]
rs12102755	1.00[ASN][1000 genomes]
rs12102967	1.00[ASN][1000 genomes]
rs12103248	1.00[ASN][1000 genomes]
rs12103260	1.00[ASN][1000 genomes]
rs13330632	1.00[ASN][1000 genomes]
rs13331659	1.00[ASN][1000 genomes]
rs13333024	1.00[ASN][1000 genomes]
rs13333199	1.00[ASN][1000 genomes]
rs13337671	1.00[ASN][1000 genomes]
rs13337810	1.00[ASN][1000 genomes]
rs13338849	1.00[ASN][1000 genomes]
rs13339608	1.00[ASN][1000 genomes]
rs16945694	1.00[ASN][1000 genomes]
rs16945716	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945720	0.85[EUR][1000 genomes]
rs2019240	0.82[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap]
rs28375672	1.00[ASN][1000 genomes]
rs28409782	1.00[ASN][1000 genomes]
rs28412153	1.00[ASN][1000 genomes]
rs28440861	1.00[ASN][1000 genomes]
rs28539843	1.00[ASN][1000 genomes]
rs28589989	1.00[ASN][1000 genomes]
rs28656465	1.00[ASN][1000 genomes]
rs28680748	1.00[ASN][1000 genomes]
rs28854517	1.00[ASN][1000 genomes]
rs3852743	1.00[ASN][1000 genomes]
rs3950354	1.00[ASN][1000 genomes]
rs55898403	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60201061	1.00[ASN][1000 genomes]
rs60943725	1.00[ASN][1000 genomes]
rs61326782	1.00[ASN][1000 genomes]
rs6500318	1.00[ASN][1000 genomes]
rs6500376	1.00[ASN][1000 genomes]
rs6500409	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7187488	1.00[ASN][1000 genomes]
rs7190225	1.00[ASN][1000 genomes]
rs7193023	1.00[ASN][1000 genomes]
rs7193945	1.00[ASN][1000 genomes]
rs7198023	1.00[ASN][1000 genomes]
rs7198908	1.00[ASN][1000 genomes]
rs7205263	1.00[ASN][1000 genomes]
rs7205736	1.00[ASN][1000 genomes]
rs73536749	1.00[ASN][1000 genomes]
rs73536752	1.00[ASN][1000 genomes]
rs73536754	1.00[ASN][1000 genomes]
rs73536758	1.00[ASN][1000 genomes]
rs73536770	1.00[ASN][1000 genomes]
rs73536779	1.00[ASN][1000 genomes]
rs73536785	1.00[ASN][1000 genomes]
rs73536798	1.00[ASN][1000 genomes]
rs73539129	1.00[ASN][1000 genomes]
rs73539135	1.00[ASN][1000 genomes]
rs73539141	1.00[ASN][1000 genomes]
rs73539146	1.00[ASN][1000 genomes]
rs7500284	1.00[ASN][1000 genomes]
rs8043743	1.00[ASN][1000 genomes]
rs8046482	1.00[ASN][1000 genomes]
rs8050977	1.00[ASN][1000 genomes]
rs8053678	1.00[ASN][1000 genomes]
rs8054264	1.00[ASN][1000 genomes]
rs8054830	1.00[ASN][1000 genomes]
rs8055999	1.00[ASN][1000 genomes]
rs8059334	1.00[ASN][1000 genomes]
rs8062495	1.00[ASN][1000 genomes]
rs8064036	1.00[ASN][1000 genomes]
rs918178	1.00[ASN][1000 genomes]
rs9924657	1.00[ASN][1000 genomes]
rs9924916	1.00[ASN][1000 genomes]
rs9926150	1.00[ASN][1000 genomes]
rs9926598	1.00[ASN][1000 genomes]
rs9927787	1.00[ASN][1000 genomes]
rs9931666	1.00[ASN][1000 genomes]
rs9933191	1.00[ASN][1000 genomes]
rs9934384	1.00[ASN][1000 genomes]
rs9937177	1.00[ASN][1000 genomes]
rs9937514	1.00[ASN][1000 genomes]
rs9938346	1.00[ASN][1000 genomes]
rs9938516	1.00[ASN][1000 genomes]
rs9939949	1.00[ASN][1000 genomes]
rs9940448	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv525976	chr16:47583872-48035026	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv833218	chr16:47869819-48051745	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47991000-47997800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr16:47991400-47998800	Weak transcription	Fetal Brain Female	brain
3	chr16:47991400-47999600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr16:47992400-47998400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr16:47993000-47998400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr16:47997400-47999400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr16:47997600-47999200	Enhancers	Brain Germinal Matrix	brain
8	chr16:47997600-48001000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr16:47997600-48002000	Enhancers	Fetal Brain Male	brain

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