Variant report

Variant	rs16945720
Chromosome Location	chr16:47981631-47981632
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:47968979..47971018-chr16:47981443..47983409,2	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs11076576	0.88[AMR][1000 genomes]
rs12102746	0.92[AMR][1000 genomes]
rs12102755	0.92[AMR][1000 genomes]
rs12102942	0.88[AMR][1000 genomes]
rs12102967	0.84[AMR][1000 genomes]
rs12103248	0.92[AMR][1000 genomes]
rs12103260	0.92[AMR][1000 genomes]
rs13330337	0.88[AMR][1000 genomes]
rs13333024	0.88[AMR][1000 genomes]
rs13333199	0.88[AMR][1000 genomes]
rs13335407	0.88[AMR][1000 genomes]
rs13337671	0.88[AMR][1000 genomes]
rs1486419	0.88[AMR][1000 genomes]
rs16945716	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1901903	0.88[AMR][1000 genomes]
rs28375672	0.88[AMR][1000 genomes]
rs28409782	0.88[AMR][1000 genomes]
rs28412153	0.88[AMR][1000 genomes]
rs28656465	0.88[AMR][1000 genomes]
rs28712810	0.88[AMR][1000 genomes]
rs28715928	0.88[AMR][1000 genomes]
rs28854517	0.88[AMR][1000 genomes]
rs3950354	0.88[AMR][1000 genomes]
rs4785551	0.85[EUR][1000 genomes]
rs55898403	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60201061	0.88[AMR][1000 genomes]
rs6500318	0.90[YRI][hapmap];0.88[AMR][1000 genomes]
rs6500376	0.84[AMR][1000 genomes]
rs6500409	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6598602	0.84[AMR][1000 genomes]
rs7186530	0.88[AMR][1000 genomes]
rs7186924	0.88[AMR][1000 genomes]
rs7187488	0.88[AMR][1000 genomes]
rs7193023	0.88[AMR][1000 genomes]
rs7193794	0.84[AMR][1000 genomes]
rs7193945	0.88[AMR][1000 genomes]
rs7197471	0.80[AMR][1000 genomes]
rs7197882	0.80[AMR][1000 genomes]
rs7198023	0.88[AMR][1000 genomes]
rs7199392	0.84[AMR][1000 genomes]
rs7202175	0.85[YRI][hapmap]
rs7205263	0.84[AMR][1000 genomes]
rs7205736	0.84[AMR][1000 genomes]
rs728884	0.88[AMR][1000 genomes]
rs73536770	0.88[AMR][1000 genomes]
rs7500284	0.88[AMR][1000 genomes]
rs8043743	0.88[AMR][1000 genomes]
rs8044496	0.84[AMR][1000 genomes]
rs8046482	0.84[AMR][1000 genomes]
rs8050977	0.88[AMR][1000 genomes]
rs8053678	0.84[AMR][1000 genomes]
rs8054264	0.88[AMR][1000 genomes]
rs8054830	0.84[AMR][1000 genomes]
rs8055999	0.88[AMR][1000 genomes]
rs8059334	0.88[AMR][1000 genomes]
rs8062269	0.84[AMR][1000 genomes]
rs8062495	0.81[AMR][1000 genomes]
rs8062847	0.88[AMR][1000 genomes]
rs8064036	0.88[AMR][1000 genomes]
rs8064193	0.88[AMR][1000 genomes]
rs876258	0.84[AMR][1000 genomes]
rs918178	0.84[AMR][1000 genomes]
rs9924916	0.88[AMR][1000 genomes]
rs9926150	0.88[AMR][1000 genomes]
rs9927096	0.88[AMR][1000 genomes]
rs9927438	0.88[AMR][1000 genomes]
rs9931638	0.84[AMR][1000 genomes]
rs9931666	0.81[AMR][1000 genomes]
rs9933191	0.88[AMR][1000 genomes]
rs9934384	0.88[AMR][1000 genomes]
rs9934668	0.88[AMR][1000 genomes]
rs9938516	0.88[AMR][1000 genomes]
rs9940448	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv525976	chr16:47583872-48035026	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv833218	chr16:47869819-48051745	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47981400-47982000	Enhancers	Liver	Liver
2	chr16:47981400-47982000	Enhancers	Lung	lung

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