Variant report
Variant | rs28715928 |
---|---|
Chromosome Location | chr16:47889757-47889758 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1011532 | 0.84[EUR][1000 genomes] |
rs10492847 | 1.00[EUR][1000 genomes] |
rs10521162 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs10521163 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs11076576 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs11860828 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs11862281 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs1200967 | 0.84[EUR][1000 genomes] |
rs12102746 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs12102755 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs12102942 | 0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs12102967 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs12103248 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs12103260 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs13330337 | 0.91[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs13330510 | 0.84[EUR][1000 genomes] |
rs13330632 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs13331659 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs13331748 | 0.84[EUR][1000 genomes] |
rs13333024 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs13333199 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs13334408 | 0.84[EUR][1000 genomes] |
rs13335407 | 0.91[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs13336200 | 0.84[EUR][1000 genomes] |
rs13337281 | 0.84[EUR][1000 genomes] |
rs13337671 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs13337810 | 1.00[EUR][1000 genomes] |
rs13337972 | 0.84[EUR][1000 genomes] |
rs13338447 | 0.84[EUR][1000 genomes] |
rs13338849 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs13339608 | 0.94[EUR][1000 genomes] |
rs1486419 | 0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs16942513 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs16945438 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs16945443 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs16945460 | 0.84[EUR][1000 genomes] |
rs16945474 | 0.84[EUR][1000 genomes] |
rs16945509 | 0.84[EUR][1000 genomes] |
rs16945543 | 0.84[EUR][1000 genomes] |
rs16945553 | 0.81[EUR][1000 genomes] |
rs16945557 | 0.84[EUR][1000 genomes] |
rs16945594 | 0.84[EUR][1000 genomes] |
rs16945617 | 0.84[EUR][1000 genomes] |
rs16945621 | 0.84[EUR][1000 genomes] |
rs16945624 | 0.84[EUR][1000 genomes] |
rs16945629 | 0.84[EUR][1000 genomes] |
rs16945641 | 0.84[EUR][1000 genomes] |
rs16945644 | 0.84[EUR][1000 genomes] |
rs16945648 | 0.84[EUR][1000 genomes] |
rs16945650 | 0.84[EUR][1000 genomes] |
rs16945652 | 0.84[EUR][1000 genomes] |
rs16945661 | 0.84[EUR][1000 genomes] |
rs16945662 | 0.84[EUR][1000 genomes] |
rs16945673 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs16945694 | 0.94[EUR][1000 genomes] |
rs16945716 | 0.88[AMR][1000 genomes] |
rs16945720 | 0.88[AMR][1000 genomes] |
rs1901903 | 0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs1973217 | 0.83[AMR][1000 genomes] |
rs2046531 | 0.84[EUR][1000 genomes] |
rs2054000 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs2101373 | 0.84[EUR][1000 genomes] |
rs2341961 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs28375672 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs28385551 | 0.84[EUR][1000 genomes] |
rs28409782 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs28412153 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs28418647 | 0.87[EUR][1000 genomes] |
rs28434188 | 0.87[EUR][1000 genomes] |
rs28440861 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs28448361 | 0.84[EUR][1000 genomes] |
rs28454787 | 0.87[EUR][1000 genomes] |
rs28496502 | 0.87[EUR][1000 genomes] |
rs28497443 | 0.84[EUR][1000 genomes] |
rs28539472 | 0.87[EUR][1000 genomes] |
rs28539843 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs28542319 | 0.84[EUR][1000 genomes] |
rs28566036 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs28577066 | 0.84[EUR][1000 genomes] |
rs28581476 | 0.87[EUR][1000 genomes] |
rs28589989 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs28590410 | 0.84[EUR][1000 genomes] |
rs28597108 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs28606368 | 1.00[EUR][1000 genomes] |
rs28630392 | 0.87[EUR][1000 genomes] |
rs28656465 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs28679750 | 0.87[EUR][1000 genomes] |
rs28680748 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs28688420 | 0.84[EUR][1000 genomes] |
rs28688663 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs28690829 | 0.87[EUR][1000 genomes] |
rs28691740 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs28712810 | 0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs28754618 | 0.84[EUR][1000 genomes] |
rs2880205 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs28853924 | 0.87[EUR][1000 genomes] |
rs28854517 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs28865322 | 0.84[EUR][1000 genomes] |
rs28887790 | 0.84[AFR][1000 genomes] |
rs3852743 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs3903067 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs3950354 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs4271615 | 0.84[EUR][1000 genomes] |
rs55898403 | 0.88[AMR][1000 genomes] |
rs56687111 | 0.84[EUR][1000 genomes] |
rs57930434 | 0.84[EUR][1000 genomes] |
rs58190241 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs58550976 | 0.84[EUR][1000 genomes] |
rs60049376 | 0.84[EUR][1000 genomes] |
rs60201061 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs60943725 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs61053970 | 0.84[EUR][1000 genomes] |
rs61115457 | 0.84[EUR][1000 genomes] |
rs61326782 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs61465994 | 0.84[EUR][1000 genomes] |
rs6500318 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs6500376 | 0.96[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs6598598 | 0.84[EUR][1000 genomes] |
rs6598602 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs6598613 | 0.84[EUR][1000 genomes] |
rs7184358 | 0.84[EUR][1000 genomes] |
rs7185753 | 0.84[EUR][1000 genomes] |
rs7186530 | 0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs7186864 | 0.84[EUR][1000 genomes] |
rs7186924 | 0.81[AFR][1000 genomes];0.91[AMR][1000 genomes] |
rs7187134 | 0.84[EUR][1000 genomes] |
rs7187393 | 0.84[EUR][1000 genomes] |
rs7187488 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs7189446 | 0.84[EUR][1000 genomes] |
rs7190225 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs7190399 | 0.84[EUR][1000 genomes] |
rs7193023 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs7193794 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs7193945 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs7195074 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs7197471 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs7197882 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs7198023 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs7198908 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs7199392 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs7200406 | 0.84[EUR][1000 genomes] |
rs7201764 | 0.84[EUR][1000 genomes] |
rs7202145 | 0.84[EUR][1000 genomes] |
rs7202457 | 0.84[EUR][1000 genomes] |
rs7202612 | 0.84[EUR][1000 genomes] |
rs7203019 | 0.84[EUR][1000 genomes] |
rs7205263 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs7205736 | 0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs728884 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73534789 | 0.84[EUR][1000 genomes] |
rs73534794 | 0.81[EUR][1000 genomes] |
rs73536704 | 0.84[EUR][1000 genomes] |
rs73536711 | 0.84[EUR][1000 genomes] |
rs73536717 | 0.87[EUR][1000 genomes] |
rs73536721 | 0.87[EUR][1000 genomes] |
rs73536725 | 0.87[EUR][1000 genomes] |
rs73536729 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73536749 | 1.00[EUR][1000 genomes] |
rs73536752 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs73536754 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs73536758 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs73536770 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs73536779 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs73536785 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs73536798 | 0.94[EUR][1000 genomes] |
rs73536906 | 0.84[EUR][1000 genomes] |
rs73536913 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs73536920 | 0.84[EUR][1000 genomes] |
rs73536936 | 0.84[EUR][1000 genomes] |
rs73536939 | 0.84[EUR][1000 genomes] |
rs73539129 | 0.94[EUR][1000 genomes] |
rs73539135 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs73539141 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs73539146 | 0.94[EUR][1000 genomes] |
rs73544253 | 0.84[EUR][1000 genomes] |
rs73544267 | 0.84[EUR][1000 genomes] |
rs73544271 | 0.84[EUR][1000 genomes] |
rs73544281 | 0.84[EUR][1000 genomes] |
rs73544284 | 0.84[EUR][1000 genomes] |
rs73546131 | 0.84[EUR][1000 genomes] |
rs73546132 | 0.84[EUR][1000 genomes] |
rs73546138 | 0.84[EUR][1000 genomes] |
rs73546141 | 0.84[EUR][1000 genomes] |
rs73546143 | 0.84[EUR][1000 genomes] |
rs73551221 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs73551228 | 0.84[EUR][1000 genomes] |
rs73551230 | 0.84[EUR][1000 genomes] |
rs73551233 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs73551238 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs73552163 | 0.84[EUR][1000 genomes] |
rs73552167 | 0.84[EUR][1000 genomes] |
rs7500284 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs8043743 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs8044496 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs8046175 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs8046259 | 0.84[EUR][1000 genomes] |
rs8046482 | 0.96[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs8047342 | 0.84[EUR][1000 genomes] |
rs8048233 | 0.84[EUR][1000 genomes] |
rs8048279 | 0.84[EUR][1000 genomes] |
rs8049111 | 0.84[EUR][1000 genomes] |
rs8050977 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs8052294 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs8053042 | 0.84[EUR][1000 genomes] |
rs8053678 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs8054017 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs8054264 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs8054582 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs8054830 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs8055624 | 0.84[EUR][1000 genomes] |
rs8055695 | 0.84[EUR][1000 genomes] |
rs8055999 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs8059334 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs8061062 | 0.84[EUR][1000 genomes] |
rs8061556 | 0.84[EUR][1000 genomes] |
rs8061656 | 0.84[EUR][1000 genomes] |
rs8062269 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs8062495 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs8062847 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs8064036 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs8064193 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs876258 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs918178 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs9328600 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs9746012 | 0.84[EUR][1000 genomes] |
rs9746020 | 0.84[EUR][1000 genomes] |
rs9921542 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs9922381 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs9923591 | 0.84[EUR][1000 genomes] |
rs9924657 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs9924916 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs9926150 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs9926598 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs9926971 | 0.84[EUR][1000 genomes] |
rs9927096 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs9927438 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs9927787 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs9927829 | 0.84[EUR][1000 genomes] |
rs9929392 | 0.84[EUR][1000 genomes] |
rs9929794 | 0.84[EUR][1000 genomes] |
rs9930026 | 0.84[EUR][1000 genomes] |
rs9931638 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs9931666 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs9932128 | 0.84[EUR][1000 genomes] |
rs9933191 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs9934384 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs9934478 | 0.81[EUR][1000 genomes] |
rs9934668 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs9935542 | 0.84[EUR][1000 genomes] |
rs9936580 | 0.84[EUR][1000 genomes] |
rs9937177 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs9937514 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs9938346 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs9938516 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs9939949 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs9940448 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs9940610 | 0.84[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv520355 | chr16:47424828-48164777 | Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
2 | nsv525976 | chr16:47583872-48035026 | Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
3 | nsv428657 | chr16:47748036-47913816 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | nsv833218 | chr16:47869819-48051745 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
5 | esv3351124 | chr16:47886851-47890349 | Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding region | 1 gene(s) | inside rSNPs | n/a |
6 | esv3433157 | chr16:47886851-47891049 | Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS | TF binding region | 1 gene(s) | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr16:47883000-47890600 | Weak transcription | Fetal Brain Female | brain |
2 | chr16:47883200-47889800 | Weak transcription | Gastric | stomach |
3 | chr16:47883400-47899600 | Weak transcription | H9 Cell Line | embryonic stem cell |
4 | chr16:47883800-47893000 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
5 | chr16:47885400-47891000 | Weak transcription | Fetal Brain Male | brain |
6 | chr16:47885600-47892400 | Weak transcription | Brain Anterior Caudate | brain |
7 | chr16:47888400-47890200 | Enhancers | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
8 | chr16:47889400-47889800 | Enhancers | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
9 | chr16:47889400-47890000 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
10 | chr16:47889400-47893400 | Enhancers | Brain Germinal Matrix | brain |