Variant report

Variant	rs16945661
Chromosome Location	chr16:47861814-47861815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 238 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:234)

rs_ID	r²[population]
rs1011532	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs10492847	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10521162	1.00[EUR][1000 genomes]
rs10521163	1.00[EUR][1000 genomes]
rs11860828	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs11862281	1.00[EUR][1000 genomes]
rs11863178	1.00[EUR][1000 genomes]
rs1200967	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12102942	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13330337	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13330510	1.00[EUR][1000 genomes]
rs13330632	0.90[AMR][1000 genomes]
rs13331659	0.90[AMR][1000 genomes]
rs13331748	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13332058	1.00[EUR][1000 genomes]
rs13332953	0.92[EUR][1000 genomes]
rs13334408	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13335407	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13336200	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13337281	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13337810	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13337972	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13338447	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13338849	0.90[AMR][1000 genomes]
rs13339608	0.95[AMR][1000 genomes]
rs1486419	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16942513	1.00[EUR][1000 genomes]
rs16945408	0.92[EUR][1000 genomes]
rs16945413	1.00[EUR][1000 genomes]
rs16945430	0.96[EUR][1000 genomes]
rs16945438	1.00[EUR][1000 genomes]
rs16945443	1.00[EUR][1000 genomes]
rs16945460	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945474	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945493	1.00[CHB][hapmap];0.82[LWK][hapmap]
rs16945509	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945543	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945553	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945557	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945594	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945617	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945621	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945624	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945629	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945641	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945644	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945648	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945650	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945652	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945662	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945673	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16945694	0.86[AMR][1000 genomes]
rs1901903	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1973217	0.81[EUR][1000 genomes]
rs2046531	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2054000	1.00[EUR][1000 genomes]
rs2101373	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2111226	0.89[EUR][1000 genomes]
rs2341961	1.00[EUR][1000 genomes]
rs28385551	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28418647	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28434188	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28440861	0.90[AMR][1000 genomes]
rs28448361	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28454787	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28496502	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28497443	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28539472	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28539843	0.90[AMR][1000 genomes]
rs28542319	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28566036	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28577066	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28581476	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28589989	0.90[AMR][1000 genomes]
rs28590410	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28597108	1.00[EUR][1000 genomes]
rs28606368	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28630392	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28679750	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28680748	0.82[AMR][1000 genomes]
rs28688420	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28688663	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28690829	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28691740	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28712810	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28715928	0.84[EUR][1000 genomes]
rs28754618	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2880205	1.00[EUR][1000 genomes]
rs28853924	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28865322	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3852743	0.90[AMR][1000 genomes]
rs3903067	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4271615	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56268318	1.00[EUR][1000 genomes]
rs56687111	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57930434	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58190241	1.00[EUR][1000 genomes]
rs58550976	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60049376	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60200500	1.00[EUR][1000 genomes]
rs60943725	0.90[AMR][1000 genomes]
rs61053970	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61115457	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61326782	0.90[AMR][1000 genomes]
rs61465994	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6500318	1.00[CEU][hapmap]
rs6500409	0.86[AMR][1000 genomes]
rs6598598	1.00[EUR][1000 genomes]
rs6598602	1.00[EUR][1000 genomes]
rs6598613	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7184358	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7185753	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7186530	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7186864	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7186924	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7187134	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7187393	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7189446	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7190225	0.86[AMR][1000 genomes]
rs7190399	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7192029	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7193794	1.00[EUR][1000 genomes]
rs7194249	0.92[EUR][1000 genomes]
rs7195074	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7197471	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197659	1.00[EUR][1000 genomes]
rs7197882	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs7198908	0.90[AMR][1000 genomes]
rs7199392	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs7199696	1.00[EUR][1000 genomes]
rs7200406	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7201764	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7202145	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7202175	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];0.88[TSI][hapmap]
rs7202457	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7202612	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7203019	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728884	0.84[EUR][1000 genomes]
rs73534789	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73534794	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73536704	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536711	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536717	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73536721	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73536725	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73536729	0.84[EUR][1000 genomes]
rs73536749	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73536752	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73536754	0.90[AMR][1000 genomes]
rs73536758	0.90[AMR][1000 genomes]
rs73536779	0.90[AMR][1000 genomes]
rs73536785	0.90[AMR][1000 genomes]
rs73536798	0.89[AMR][1000 genomes]
rs73536906	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73536913	1.00[EUR][1000 genomes]
rs73536920	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73536936	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73536939	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73539129	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs73539135	0.90[AMR][1000 genomes]
rs73539141	0.90[AMR][1000 genomes]
rs73539146	0.89[AMR][1000 genomes]
rs73544253	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73544267	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73544271	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73544281	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73544284	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73546131	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73546132	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73546138	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73546141	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73546143	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551204	0.92[EUR][1000 genomes]
rs73551214	1.00[EUR][1000 genomes]
rs73551221	1.00[EUR][1000 genomes]
rs73551224	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73551228	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73551230	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73551233	1.00[EUR][1000 genomes]
rs73551238	1.00[EUR][1000 genomes]
rs73552163	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73552167	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8044496	1.00[EUR][1000 genomes]
rs8046175	1.00[EUR][1000 genomes]
rs8046259	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8047342	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8048233	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8048279	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8049111	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8051273	0.92[EUR][1000 genomes]
rs8052294	1.00[EUR][1000 genomes]
rs8053042	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8054017	1.00[EUR][1000 genomes]
rs8054582	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs8055624	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8055695	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8061062	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8061556	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8061656	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8062269	1.00[EUR][1000 genomes]
rs8064193	0.84[EUR][1000 genomes]
rs876258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs9328600	1.00[EUR][1000 genomes]
rs9745827	0.84[AFR][1000 genomes]
rs9746012	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9746020	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9746028	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9746613	0.81[AFR][1000 genomes]
rs9921542	1.00[EUR][1000 genomes]
rs9922381	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs9923591	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9924657	0.86[AMR][1000 genomes]
rs9926598	0.86[AMR][1000 genomes]
rs9926971	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9927096	0.84[EUR][1000 genomes]
rs9927438	0.84[EUR][1000 genomes]
rs9927787	0.90[AMR][1000 genomes]
rs9927829	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9929392	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9929794	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9930026	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9931638	1.00[EUR][1000 genomes]
rs9932128	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9934478	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9934668	0.84[EUR][1000 genomes]
rs9935427	1.00[EUR][1000 genomes]
rs9935542	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9936361	0.92[EUR][1000 genomes]
rs9936580	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9937177	0.90[AMR][1000 genomes]
rs9937514	0.90[AMR][1000 genomes]
rs9938346	0.90[AMR][1000 genomes]
rs9939949	0.90[AMR][1000 genomes]
rs9940610	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv525976	chr16:47583872-48035026	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv428657	chr16:47748036-47913816	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1055833	chr16:47776838-47875609	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47861400-47870200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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