Variant report

Variant	rs16945408
Chromosome Location	chr16:47595005-47595006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:47594118..47597140-chr16:47598345..47602068,5	K562	blood:

Variant related genes	Relation type
ENSG00000261336	Chromatin interaction

Extended variants
information (count: 268 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:256)

rs_ID	r²[population]
rs1011532	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10521162	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10521163	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11860257	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11860828	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11861008	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11862096	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11862281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11862517	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11863178	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11865790	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];0.85[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1200967	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12102942	0.92[EUR][1000 genomes]
rs13330181	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13330337	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13330510	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13330699	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13330832	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13331418	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13331748	0.92[EUR][1000 genomes]
rs13332032	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13332058	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13332953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13333003	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13334239	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13334342	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13334408	0.92[EUR][1000 genomes]
rs13335171	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13335407	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13336200	0.92[EUR][1000 genomes]
rs13336943	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13337281	0.92[EUR][1000 genomes]
rs13337972	0.92[EUR][1000 genomes]
rs13338447	0.92[EUR][1000 genomes]
rs13338489	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13339357	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1486419	0.92[EUR][1000 genomes]
rs1541589	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16942513	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945353	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945354	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945357	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945379	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945382	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945386	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16945387	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16945401	1.00[ASN][1000 genomes]
rs16945413	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945430	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945438	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945443	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945460	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945474	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945493	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs16945509	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945543	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945553	0.89[EUR][1000 genomes]
rs16945557	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs16945594	0.92[EUR][1000 genomes]
rs16945617	0.92[EUR][1000 genomes]
rs16945621	0.92[EUR][1000 genomes]
rs16945624	0.92[EUR][1000 genomes]
rs16945629	0.92[EUR][1000 genomes]
rs16945641	0.92[EUR][1000 genomes]
rs16945644	0.92[EUR][1000 genomes]
rs16945648	0.92[EUR][1000 genomes]
rs16945650	0.92[EUR][1000 genomes]
rs16945652	0.92[EUR][1000 genomes]
rs16945661	0.92[EUR][1000 genomes]
rs16945662	0.92[EUR][1000 genomes]
rs16955095	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16955781	1.00[EUR][1000 genomes]
rs16956024	1.00[EUR][1000 genomes]
rs16956031	1.00[EUR][1000 genomes]
rs16956083	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16956093	1.00[EUR][1000 genomes]
rs1901903	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1973217	0.83[AMR][1000 genomes]
rs2046531	0.92[EUR][1000 genomes]
rs2054000	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2101373	0.92[EUR][1000 genomes]
rs2111226	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2341961	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28385551	0.92[EUR][1000 genomes]
rs28448361	0.92[EUR][1000 genomes]
rs28450418	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28482463	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28497443	0.92[EUR][1000 genomes]
rs28532949	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28542319	0.92[EUR][1000 genomes]
rs28566542	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28577066	0.92[EUR][1000 genomes]
rs28577929	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28590410	0.92[EUR][1000 genomes]
rs28597108	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28681341	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28688420	0.92[EUR][1000 genomes]
rs28712810	0.92[EUR][1000 genomes]
rs28754618	0.92[EUR][1000 genomes]
rs2880205	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28844885	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28865322	0.92[EUR][1000 genomes]
rs28898390	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4271615	0.92[EUR][1000 genomes]
rs56268318	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56687111	0.92[EUR][1000 genomes]
rs56819508	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56830681	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57543382	1.00[EUR][1000 genomes]
rs57772915	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57884999	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58190241	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58251914	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58550976	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59453301	1.00[EUR][1000 genomes]
rs59547333	1.00[EUR][1000 genomes]
rs60200500	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61053970	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61078258	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61465994	0.92[EUR][1000 genomes]
rs6598598	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6598602	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6598613	0.92[EUR][1000 genomes]
rs7184358	0.92[EUR][1000 genomes]
rs7185641	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7185753	0.92[EUR][1000 genomes]
rs7185915	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7186530	0.92[EUR][1000 genomes]
rs7186864	0.92[EUR][1000 genomes]
rs7186924	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7187134	0.92[EUR][1000 genomes]
rs7187393	0.92[EUR][1000 genomes]
rs7189446	0.92[EUR][1000 genomes]
rs7190399	0.92[EUR][1000 genomes]
rs7192537	1.00[EUR][1000 genomes]
rs7193794	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7194190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7194249	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7195074	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7196244	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197471	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7197586	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7197659	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197882	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7199392	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7199696	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7199958	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7200041	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7200149	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7200406	0.92[EUR][1000 genomes]
rs7200554	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7201764	0.92[EUR][1000 genomes]
rs7202145	0.92[EUR][1000 genomes]
rs7202457	0.92[EUR][1000 genomes]
rs7202612	0.92[EUR][1000 genomes]
rs7202716	1.00[EUR][1000 genomes]
rs7203019	0.92[EUR][1000 genomes]
rs7204944	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73534789	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73534794	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536906	0.92[EUR][1000 genomes]
rs73536913	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536920	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536936	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536939	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73538997	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73539001	1.00[EUR][1000 genomes]
rs73541004	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73541007	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73541010	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73541086	1.00[EUR][1000 genomes]
rs73541089	1.00[EUR][1000 genomes]
rs73541102	1.00[EUR][1000 genomes]
rs73543108	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73543111	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73543118	1.00[EUR][1000 genomes]
rs73544253	0.92[EUR][1000 genomes]
rs73544267	0.92[EUR][1000 genomes]
rs73544271	0.92[EUR][1000 genomes]
rs73544281	0.92[EUR][1000 genomes]
rs73544284	0.92[EUR][1000 genomes]
rs73546131	0.92[EUR][1000 genomes]
rs73546132	0.92[EUR][1000 genomes]
rs73546138	0.92[EUR][1000 genomes]
rs73546141	0.92[EUR][1000 genomes]
rs73546143	0.92[EUR][1000 genomes]
rs73547271	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547284	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547290	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547296	1.00[ASN][1000 genomes]
rs73549309	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549315	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549319	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549387	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551204	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551214	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551221	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551224	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551228	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551230	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551233	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551238	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73552163	0.92[EUR][1000 genomes]
rs73552167	0.92[EUR][1000 genomes]
rs7498593	1.00[EUR][1000 genomes]
rs7499413	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8044496	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8046175	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8046259	0.92[EUR][1000 genomes]
rs8047342	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8048233	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8048279	0.92[EUR][1000 genomes]
rs8049111	0.92[EUR][1000 genomes]
rs8051273	1.00[EUR][1000 genomes]
rs8052294	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8053042	0.92[EUR][1000 genomes]
rs8053323	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8054017	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8054582	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8055624	0.92[EUR][1000 genomes]
rs8055695	0.92[EUR][1000 genomes]
rs8061062	0.92[EUR][1000 genomes]
rs8061556	0.92[EUR][1000 genomes]
rs8061656	0.92[EUR][1000 genomes]
rs8062269	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs876258	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9328591	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs9328592	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9328600	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9746012	0.92[EUR][1000 genomes]
rs9746020	0.92[EUR][1000 genomes]
rs9746028	0.85[EUR][1000 genomes]
rs9921542	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9922381	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9922569	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9923591	0.92[EUR][1000 genomes]
rs9926490	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9926971	0.92[EUR][1000 genomes]
rs9927084	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9927829	0.92[EUR][1000 genomes]
rs9929392	0.92[EUR][1000 genomes]
rs9929794	0.92[EUR][1000 genomes]
rs9930026	0.92[EUR][1000 genomes]
rs9931638	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9932128	0.92[EUR][1000 genomes]
rs9932230	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9933052	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9934478	0.89[EUR][1000 genomes]
rs9935427	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9935542	0.92[EUR][1000 genomes]
rs9936361	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9936434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs9936580	0.92[EUR][1000 genomes]
rs9940610	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795199	chr16:47111119-47732476	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916572	chr16:47227786-47646103	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv933151	chr16:47236330-47646103	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	esv2757637	chr16:47261512-47595005	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv2758644	chr16:47261512-47606287	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	esv2758423	chr16:47316866-47606287	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv427983	chr16:47316866-47606287	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	esv34317	chr16:47390600-47672479	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
9	nsv572537	chr16:47411203-47599502	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
10	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	esv1794084	chr16:47478207-47676184	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
12	nsv525976	chr16:47583872-48035026	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47539400-47599000	Weak transcription	NHEK	skin
2	chr16:47548800-47605000	Weak transcription	Right Ventricle	heart
3	chr16:47553600-47599000	Weak transcription	NHLF	lung
4	chr16:47580000-47599200	Weak transcription	Osteobl	bone
5	chr16:47581000-47596000	Weak transcription	Brain Anterior Caudate	brain
6	chr16:47581000-47599000	Weak transcription	HSMM	muscle
7	chr16:47581000-47615800	Weak transcription	Placenta	Placenta
8	chr16:47581000-47624200	Weak transcription	Brain Substantia Nigra	brain
9	chr16:47581200-47624600	Weak transcription	Colonic Mucosa	Colon
10	chr16:47581200-47627400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr16:47581400-47641800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr16:47581800-47599000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr16:47581800-47621400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr16:47582000-47608200	Weak transcription	Fetal Thymus	thymus
15	chr16:47582000-47624200	Weak transcription	Fetal Kidney	kidney
16	chr16:47582200-47625000	Weak transcription	Fetal Heart	heart
17	chr16:47584600-47599000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr16:47584600-47599000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr16:47584600-47599200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr16:47584600-47599200	Weak transcription	K562	blood
21	chr16:47584600-47599200	Weak transcription	NH-A	brain
22	chr16:47584600-47599400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr16:47584600-47600600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr16:47584600-47604200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr16:47584600-47607000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr16:47584600-47624400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr16:47584600-47624400	Weak transcription	Colon Smooth Muscle	Colon
28	chr16:47584800-47595800	Weak transcription	Aorta	Aorta
29	chr16:47584800-47598200	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr16:47584800-47598800	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr16:47584800-47599200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr16:47584800-47599200	Weak transcription	Left Ventricle	heart
33	chr16:47584800-47599600	Weak transcription	Stomach Smooth Muscle	stomach
34	chr16:47584800-47601800	Weak transcription	Brain Hippocampus Middle	brain
35	chr16:47584800-47622600	Weak transcription	Brain Angular Gyrus	brain
36	chr16:47585200-47595200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr16:47586200-47599200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr16:47586200-47605800	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr16:47586800-47600600	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr16:47587000-47599200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr16:47588000-47598800	Weak transcription	GM12878-XiMat	blood
42	chr16:47588000-47599600	Weak transcription	Brain Germinal Matrix	brain
43	chr16:47588000-47607400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr16:47588200-47599000	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr16:47588200-47599000	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr16:47588200-47599600	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr16:47588200-47599800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr16:47588200-47599800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr16:47588200-47606600	Weak transcription	Duodenum Mucosa	Duodenum
50	chr16:47588200-47622600	Weak transcription	Fetal Lung	lung

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