The 2.0 version of rSNPBase

Variant report

Variant rs16945401
Chromosome Location chr16:47572228-47572229
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:76 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr16:47539200-47580400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
2 chr16:47539400-47599000 Weak transcription NHEK skin
3 chr16:47548800-47605000 Weak transcription Right Ventricle heart
4 chr16:47549200-47580600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
5 chr16:47550600-47580400 Weak transcription NHDF-Ad bronchial
6 chr16:47551000-47573200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
7 chr16:47551200-47572400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
8 chr16:47552200-47573400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
9 chr16:47553600-47572600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
10 chr16:47553600-47573800 Weak transcription Left Ventricle heart
11 chr16:47553600-47599000 Weak transcription NHLF lung
12 chr16:47554600-47576000 Weak transcription Skeletal Muscle Female skeletal muscle
13 chr16:47554800-47581400 Weak transcription Fetal Heart heart
14 chr16:47557400-47583400 Weak transcription Primary T helper naive cells from peripheral blood blood
15 chr16:47558000-47587400 Weak transcription A549 lung
16 chr16:47558400-47573200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
17 chr16:47560600-47572400 Weak transcription Primary T regulatory cells fromperipheralblood blood
18 chr16:47566600-47573800 Weak transcription Brain Inferior Temporal Lobe brain
19 chr16:47566600-47578400 Weak transcription Primary T killer naive cells fromperipheralblood blood
20 chr16:47566600-47580400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
21 chr16:47566800-47572400 Weak transcription Primary T helper cells PMA-I stimulated --
22 chr16:47567200-47573000 Weak transcription Fetal Lung lung
23 chr16:47567200-47573200 Weak transcription Duodenum Mucosa Duodenum
24 chr16:47567200-47573200 Weak transcription Rectal Mucosa Donor 31 rectum
25 chr16:47567200-47579800 Weak transcription Rectal Mucosa Donor 29 rectum
26 chr16:47567200-47580400 Weak transcription Rectal Smooth Muscle rectum
27 chr16:47567400-47572400 Weak transcription Primary B cells from cord blood blood
28 chr16:47567400-47572400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
29 chr16:47567400-47572600 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr16:47567400-47573600 Weak transcription Duodenum Smooth Muscle Duodenum
31 chr16:47567400-47573600 Weak transcription Skeletal Muscle Male skeletal muscle
32 chr16:47567600-47572400 Weak transcription HUES64 Cell Line embryonic stem cell
33 chr16:47567600-47572400 Weak transcription GM12878-XiMat blood
34 chr16:47567600-47573000 Weak transcription Cortex derived primary cultured neurospheres brain
35 chr16:47567600-47573800 Weak transcription Brain Germinal Matrix brain
36 chr16:47567600-47574800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
37 chr16:47567600-47574800 Weak transcription Thymus Thymus
38 chr16:47567600-47580400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
39 chr16:47567600-47580400 Weak transcription Ovary ovary
40 chr16:47567600-47580600 Weak transcription Stomach Smooth Muscle stomach
41 chr16:47567800-47572400 Weak transcription Primary neutrophils fromperipheralblood blood
42 chr16:47567800-47572400 Weak transcription Adipose Nuclei Adipose
43 chr16:47567800-47574800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
44 chr16:47567800-47580200 Weak transcription Fetal Thymus thymus
45 chr16:47567800-47580400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
46 chr16:47567800-47580400 Weak transcription Pancreas Pancrea
47 chr16:47567800-47580600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
48 chr16:47568000-47572400 Weak transcription Primary hematopoietic stem cells short term culture blood
49 chr16:47568000-47572400 Weak transcription Dnd41 blood
50 chr16:47568000-47573800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain

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Last update: Aug 31, 2015