Variant report

Variant	rs73549309
Chromosome Location	chr16:47548254-47548255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:47541164..47545156-chr16:47546024..47549793,5	K562	blood:
2	chr16:47547375..47549482-chr16:47556202..47558891,2	K562	blood:
3	chr16:47542191..47545156-chr16:47546024..47549181,3	K562	blood:

Extended variants
information (count: 243 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:228)

rs_ID	r²[population]
rs1011532	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10521162	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10521163	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11860257	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11860828	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11861008	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11862096	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11862281	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11862517	1.00[EUR][1000 genomes]
rs11863178	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11865790	0.96[EUR][1000 genomes]
rs1200967	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13330181	1.00[EUR][1000 genomes]
rs13330337	0.92[EUR][1000 genomes]
rs13330510	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13330699	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13330832	1.00[EUR][1000 genomes]
rs13331418	1.00[EUR][1000 genomes]
rs13331748	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13332032	1.00[EUR][1000 genomes]
rs13332058	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13332800	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13332953	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13333003	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13334239	1.00[EUR][1000 genomes]
rs13334342	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13334408	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13335171	1.00[EUR][1000 genomes]
rs13335407	0.92[EUR][1000 genomes]
rs13336943	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13337972	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13338489	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13339357	1.00[EUR][1000 genomes]
rs13339406	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1541589	1.00[EUR][1000 genomes]
rs16942513	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945353	1.00[EUR][1000 genomes]
rs16945354	1.00[EUR][1000 genomes]
rs16945357	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945358	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945372	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945379	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945382	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945386	1.00[ASN][1000 genomes]
rs16945387	1.00[ASN][1000 genomes]
rs16945401	1.00[ASN][1000 genomes]
rs16945408	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945413	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945430	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945438	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945443	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945460	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945474	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945493	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16945509	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945543	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945553	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16945557	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16945594	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16945617	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16945621	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16954067	0.96[EUR][1000 genomes]
rs16955095	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16955781	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16956024	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16956031	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16956083	1.00[EUR][1000 genomes]
rs16956093	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1901903	0.92[EUR][1000 genomes]
rs2046531	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2054000	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2062968	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2101373	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2111226	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2341961	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28385551	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28448361	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28450418	1.00[EUR][1000 genomes]
rs28482463	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28497443	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28532949	0.96[EUR][1000 genomes]
rs28542319	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28566542	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28577066	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28577929	1.00[EUR][1000 genomes]
rs28590410	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28597108	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28681341	1.00[EUR][1000 genomes]
rs28688420	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2880205	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28844885	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28865322	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28898390	1.00[EUR][1000 genomes]
rs56268318	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56687111	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56819508	1.00[EUR][1000 genomes]
rs56830681	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57543382	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57772915	1.00[EUR][1000 genomes]
rs57884999	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58190241	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58251914	1.00[EUR][1000 genomes]
rs58550976	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58837077	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59453301	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59547333	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60200500	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61053970	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61078258	1.00[EUR][1000 genomes]
rs6598598	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6598602	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6598613	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7184358	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7185641	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7185753	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7185915	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7186864	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7186924	0.85[EUR][1000 genomes]
rs7187393	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7189446	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7190399	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7192537	1.00[EUR][1000 genomes]
rs7193794	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7194190	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7194249	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7195074	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7196244	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197471	0.92[EUR][1000 genomes]
rs7197586	1.00[EUR][1000 genomes]
rs7197659	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197882	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7199392	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7199696	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7199958	1.00[EUR][1000 genomes]
rs7200041	1.00[EUR][1000 genomes]
rs7200149	1.00[EUR][1000 genomes]
rs7200406	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7200554	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7201764	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7202145	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7202457	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7202612	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7202716	1.00[EUR][1000 genomes]
rs7204944	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73534789	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73534794	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536906	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73536913	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536920	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536936	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536939	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73538980	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73538991	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73538993	0.89[EUR][1000 genomes]
rs73538997	1.00[EUR][1000 genomes]
rs73539001	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73541004	1.00[EUR][1000 genomes]
rs73541007	1.00[EUR][1000 genomes]
rs73541010	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73541086	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73541089	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73541102	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73543108	1.00[EUR][1000 genomes]
rs73543111	1.00[EUR][1000 genomes]
rs73543118	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73544253	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73544267	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73544271	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73544281	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73544284	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73547271	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547284	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547290	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547296	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73549315	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549387	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551204	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551214	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551221	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551224	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551228	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551230	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551233	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551238	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7498593	1.00[EUR][1000 genomes]
rs7499413	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8044496	0.92[EUR][1000 genomes]
rs8044842	0.96[EUR][1000 genomes]
rs8046175	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8046259	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8047342	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8048233	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8048279	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8049111	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8051273	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8052294	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8053323	1.00[EUR][1000 genomes]
rs8054017	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8054582	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8061062	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8061556	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8061656	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8062269	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8063584	0.96[EUR][1000 genomes]
rs876258	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9328592	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9328600	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9746012	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9746020	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9746028	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9921542	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9922381	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9922569	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9923591	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9926490	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9927084	0.96[EUR][1000 genomes]
rs9927829	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9929392	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9929794	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9930026	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9931638	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9932230	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9933052	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9935427	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9935542	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9936361	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9936580	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795199	chr16:47111119-47732476	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916572	chr16:47227786-47646103	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv933151	chr16:47236330-47646103	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	esv2757637	chr16:47261512-47595005	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv2758644	chr16:47261512-47606287	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	esv2758423	chr16:47316866-47606287	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv427983	chr16:47316866-47606287	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	nsv533068	chr16:47354593-47559639	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
9	esv34317	chr16:47390600-47672479	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
10	esv1822041	chr16:47399460-47569732	Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
11	nsv572537	chr16:47411203-47599502	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
12	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
13	esv1794084	chr16:47478207-47676184	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
14	nsv1059367	chr16:47524706-47586335	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	esv2761905	chr16:47524718-47586347	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47525800-47563000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr16:47535200-47548400	Weak transcription	Fetal Heart	heart
3	chr16:47537200-47557200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr16:47538200-47568800	Weak transcription	Brain Angular Gyrus	brain
5	chr16:47538400-47557400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr16:47539000-47554400	Weak transcription	Fetal Brain Male	brain
7	chr16:47539000-47560200	Weak transcription	HMEC	breast
8	chr16:47539200-47557200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr16:47539200-47563800	Weak transcription	Hela-S3	cervix
10	chr16:47539200-47569600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr16:47539200-47580400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr16:47539400-47548400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr16:47539400-47548600	Weak transcription	NH-A	brain
14	chr16:47539400-47549400	Strong transcription	Primary B cells from cord blood	blood
15	chr16:47539400-47550200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr16:47539400-47557000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr16:47539400-47557000	Weak transcription	Stomach Mucosa	stomach
18	chr16:47539400-47557200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr16:47539400-47557200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr16:47539400-47557400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr16:47539400-47566400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr16:47539400-47599000	Weak transcription	NHEK	skin
23	chr16:47539800-47566600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr16:47543000-47552600	Strong transcription	Dnd41	blood
25	chr16:47543000-47553600	Strong transcription	Adipose Nuclei	Adipose
26	chr16:47543200-47550600	Strong transcription	K562	blood
27	chr16:47543200-47554200	Strong transcription	Primary B cells from peripheral blood	blood
28	chr16:47543200-47554600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr16:47543200-47556800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr16:47543400-47553600	Strong transcription	Liver	Liver
31	chr16:47543400-47554400	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr16:47543400-47555200	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr16:47543600-47548600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr16:47543600-47548800	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr16:47543600-47550600	Strong transcription	Brain Anterior Caudate	brain
36	chr16:47543600-47550600	Strong transcription	HepG2	liver
37	chr16:47543600-47553200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr16:47543600-47553600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr16:47543800-47548600	Strong transcription	Primary T cells from cord blood	blood
40	chr16:47543800-47548800	Strong transcription	Fetal Intestine Large	intestine
41	chr16:47543800-47549000	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr16:47543800-47549200	Strong transcription	Fetal Thymus	thymus
43	chr16:47543800-47551400	Strong transcription	Duodenum Mucosa	Duodenum
44	chr16:47543800-47552600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr16:47543800-47553800	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr16:47544000-47553400	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr16:47544400-47549800	Weak transcription	Colonic Mucosa	Colon
48	chr16:47545000-47548800	Strong transcription	Osteobl	bone
49	chr16:47545200-47548600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr16:47545200-47549600	Strong transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links