Variant report

Variant	rs16945372
Chromosome Location	chr16:47503173-47503174
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:47502808..47504633-chr16:47527127..47529319,2	K562	blood:
2	chr16:47500719..47503610-chr16:47510639..47513571,4	K562	blood:
3	chr16:47500342..47506721-chr16:47514207..47520673,8	K562	blood:
4	chr16:47493966..47496755-chr16:47501403..47504796,3	MCF-7	breast:
5	chr16:47165353..47167030-chr16:47501273..47503652,2	K562	blood:
6	chr16:47502099..47504584-chr16:47526951..47528627,3	K562	blood:
7	chr16:47502629..47504464-chr16:47550187..47553009,2	K562	blood:
8	chr16:47500040..47503767-chr16:47514818..47518136,4	K562	blood:
9	chr16:47177540..47179447-chr16:47502607..47504597,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000171208	Chromatin interaction
ENSG00000129636	Chromatin interaction
ENSG00000260281	Chromatin interaction
ENSG00000102893	Chromatin interaction

Extended variants
information (count: 209 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:195)

rs_ID	r²[population]
rs1011532	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1018171	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10521162	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10521163	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11860257	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11860828	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11861008	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11862096	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11862281	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11862517	1.00[EUR][1000 genomes]
rs11863178	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11865790	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs1200967	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13330181	1.00[EUR][1000 genomes]
rs13330337	0.92[EUR][1000 genomes]
rs13330510	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13330699	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13330832	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs13331418	1.00[EUR][1000 genomes]
rs13331748	0.92[EUR][1000 genomes]
rs13332032	1.00[EUR][1000 genomes]
rs13332058	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13332800	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13332953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13333003	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13334239	1.00[EUR][1000 genomes]
rs13334342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13335171	1.00[EUR][1000 genomes]
rs13335407	0.92[EUR][1000 genomes]
rs13336943	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13338489	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13339357	1.00[EUR][1000 genomes]
rs13339406	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1541589	1.00[EUR][1000 genomes]
rs16942513	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945353	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16945354	1.00[EUR][1000 genomes]
rs16945357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945358	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945382	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945386	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16945387	1.00[ASN][1000 genomes]
rs16945401	1.00[ASN][1000 genomes]
rs16945408	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945413	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945430	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945438	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945474	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945493	1.00[ASN][1000 genomes]
rs16945509	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945543	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945553	0.89[EUR][1000 genomes]
rs16945557	0.92[EUR][1000 genomes]
rs16953992	0.92[EUR][1000 genomes]
rs16954067	0.96[EUR][1000 genomes]
rs16955095	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16955781	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16956024	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16956031	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16956083	1.00[EUR][1000 genomes]
rs16956093	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2046531	0.92[EUR][1000 genomes]
rs2054000	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2062968	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2111226	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2341961	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28448361	0.92[EUR][1000 genomes]
rs28450418	1.00[EUR][1000 genomes]
rs28482463	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28532949	0.96[EUR][1000 genomes]
rs28566542	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28577929	1.00[EUR][1000 genomes]
rs28590410	0.92[EUR][1000 genomes]
rs28597108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28681341	1.00[EUR][1000 genomes]
rs2880205	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28840689	0.96[EUR][1000 genomes]
rs28844885	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28865322	0.92[EUR][1000 genomes]
rs28898390	1.00[EUR][1000 genomes]
rs56268318	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56819508	1.00[EUR][1000 genomes]
rs56830681	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57543382	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57772915	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57884999	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58190241	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58251914	1.00[EUR][1000 genomes]
rs58550976	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58837077	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59453301	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59547333	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60200500	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61053970	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61078258	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6598598	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6598602	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7185641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7185915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7192537	1.00[EUR][1000 genomes]
rs7193794	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7194190	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7194249	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7195074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7196244	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197471	0.92[EUR][1000 genomes]
rs7197586	1.00[EUR][1000 genomes]
rs7197659	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197882	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197973	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7199392	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7199696	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7199958	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7200041	1.00[EUR][1000 genomes]
rs7200149	1.00[EUR][1000 genomes]
rs7200554	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7202716	1.00[EUR][1000 genomes]
rs7204944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73534789	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73534794	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536906	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs73536913	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536920	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536936	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536939	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73538910	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73538974	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73538980	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73538991	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73538993	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73538997	1.00[EUR][1000 genomes]
rs73539001	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73541004	1.00[EUR][1000 genomes]
rs73541007	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73541010	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73541086	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73541089	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73541102	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73543108	1.00[EUR][1000 genomes]
rs73543111	1.00[EUR][1000 genomes]
rs73543118	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73544253	0.92[EUR][1000 genomes]
rs73547271	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547290	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547296	1.00[ASN][1000 genomes]
rs73549309	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549315	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549319	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549387	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551204	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551214	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551221	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551224	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551228	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551230	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551233	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551238	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7498593	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7499413	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8044496	0.92[EUR][1000 genomes]
rs8044842	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8046175	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8047342	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8047754	0.92[EUR][1000 genomes]
rs8048233	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8051273	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8052294	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8053323	0.82[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];1.00[EUR][1000 genomes]
rs8054017	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8054582	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8055882	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8062269	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8063584	0.96[EUR][1000 genomes]
rs876258	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9328591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs9328592	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9328600	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9921542	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9922381	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9922569	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9926490	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9927084	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs9928466	0.86[EUR][1000 genomes]
rs9929392	0.92[EUR][1000 genomes]
rs9931638	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9932230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9933052	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9935427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9936361	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9936434	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9936580	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795199	chr16:47111119-47732476	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916572	chr16:47227786-47646103	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv933151	chr16:47236330-47646103	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	esv2757637	chr16:47261512-47595005	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv2758644	chr16:47261512-47606287	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	esv2758423	chr16:47316866-47606287	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv427983	chr16:47316866-47606287	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	nsv533068	chr16:47354593-47559639	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
9	nsv833217	chr16:47358148-47527655	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
10	esv34317	chr16:47390600-47672479	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
11	esv1822041	chr16:47399460-47569732	Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
12	nsv572537	chr16:47411203-47599502	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
13	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
14	esv1794084	chr16:47478207-47676184	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16945372	Hs.42217	cis	multi-tissue	Pritchard

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47496200-47503200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr16:47496200-47515000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr16:47496200-47526400	Weak transcription	Pancreas	Pancrea
4	chr16:47496200-47532000	Weak transcription	Ovary	ovary
5	chr16:47496200-47538400	Weak transcription	NH-A	brain
6	chr16:47496400-47506200	Weak transcription	Fetal Thymus	thymus
7	chr16:47496400-47512000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr16:47496400-47523400	Weak transcription	Fetal Lung	lung
9	chr16:47496600-47509800	Weak transcription	Lung	lung
10	chr16:47496600-47522600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr16:47497000-47522400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr16:47497200-47511400	Weak transcription	NHLF	lung
13	chr16:47497200-47515600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr16:47497200-47521600	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr16:47497800-47509800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr16:47498200-47509800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr16:47498200-47517600	Weak transcription	A549	lung
18	chr16:47498200-47527800	Weak transcription	Small Intestine	intestine
19	chr16:47498400-47504200	Weak transcription	Aorta	Aorta
20	chr16:47498400-47509400	Weak transcription	Osteobl	bone
21	chr16:47498400-47521400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr16:47498400-47521600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr16:47498400-47526000	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr16:47498600-47504400	Weak transcription	Left Ventricle	heart
25	chr16:47498600-47506600	Weak transcription	HUVEC	blood vessel
26	chr16:47498600-47518200	Weak transcription	Fetal Muscle Trunk	muscle
27	chr16:47498800-47504200	Weak transcription	Duodenum Mucosa	Duodenum
28	chr16:47498800-47504400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr16:47498800-47507000	Weak transcription	Fetal Brain Female	brain
30	chr16:47498800-47510600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr16:47498800-47516600	Weak transcription	Fetal Muscle Leg	muscle
32	chr16:47498800-47517400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr16:47498800-47526400	Weak transcription	Esophagus	oesophagus
34	chr16:47499000-47504200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr16:47499000-47504800	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr16:47499000-47517200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr16:47499000-47526400	Weak transcription	Fetal Stomach	stomach
38	chr16:47499400-47509200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr16:47499400-47515600	Weak transcription	Primary T cells from cord blood	blood
40	chr16:47499400-47517800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr16:47499400-47518600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr16:47499400-47523400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr16:47499600-47508200	Weak transcription	Brain Angular Gyrus	brain
44	chr16:47499800-47504800	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr16:47500200-47512800	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr16:47500200-47512800	Weak transcription	Rectal Smooth Muscle	rectum
47	chr16:47500200-47517800	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr16:47500400-47505600	Weak transcription	Stomach Smooth Muscle	stomach
49	chr16:47500400-47506400	Strong transcription	Primary B cells from cord blood	blood
50	chr16:47500400-47510800	Weak transcription	Colon Smooth Muscle	Colon

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